LOCUS BC007786 1944 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens synaptosomal-associated protein, 47kDa, mRNA (cDNA
clone IMAGE:3139971), partial cds.
ACCESSION BC007786
VERSION BC007786.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1944)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1944)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007786.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: a Column: 5.
FEATURES Location/Qualifiers
source 1..1944
/db_xref="H-InvDB:HIT000086915"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3139971"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1944
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
CDS <1..1352
/gene="SNAP47"
/gene_synonym="HEL170"
/gene_synonym="SNAP-47"
/gene_synonym="SVAP1"
/codon_start=3
/product="SNAP47 protein"
/protein_id="AAH07786.2"
/db_xref="GeneID:116841"
/db_xref="HGNC:HGNC:30669"
/translation="PRRRGRLWDSSGVPQRQKRPGPWRTQTQEQMSRDVCIHTWPCTY
YLEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITILE
KGHAKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAMADASVPRTRGEELTGLMAGSQ
KRLEDTARVLHHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPP
ETKPREDVSMTSCEPFGKEGILIKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLL
MHRFEREDVDDIKVHSPYEISIRQRFIGKPDMAYRLISAKMPEVIPILEVQFSKKMEL
LEDALVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGTALHLQTSLPALS
EADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT"
BASE COUNT 480 a 523 c 546 g 395 t
ORIGIN
1 ggccgaggcg ccgcggtcgg ctctgggact cgtctggcgt ccctcagagg cagaagaggc
61 ctggaccttg gcgcacacag acccaggaac agatgagcag ggatgtctgc atccacacct
121 ggccgtgcac ctactacctg gagcccaaga ggcgatgggt tactggacag ctgtccttaa
181 catcgctgtc gctcaggttc atgactgaca gcactggaga gattctggtc agcttccccc
241 tctccagcat agttgagatc aagaaggagg cttcacattt tatcttcagc tccatcacca
301 tcctggagaa gggccatgcc aagcactggt tcagctccct gcggccaagt cgaaatgtgg
361 tcttcagcat catcgagcat ttctggaggg agctgctgct gtctcagcct ggagccatgg
421 cagacgcatc tgtcccaagg acccggggcg aggagctgac gggactcatg gctggatccc
481 agaaacgcct ggaggacacg gcgagggtcc tgcaccacca gggccagcag ctggacagcg
541 tcatgagagg cctggacaag atggagtcag acctggaggt ggcggacaga ttgctgacag
601 aactggaatc tcctgcttgg tggcccttta gctccaagct ttggaagaca ccaccggaaa
661 caaagcccag ggaagatgtc tccatgacca gttgtgaacc ctttgggaaa gaagggatac
721 tgataaaaat tcctgctgtt atttcccaca gaacagagtc tcacgttaaa ccagggaggc
781 tcaccgtcct tgtgtctggg ttggaaatac atgactccag ttctttgctc atgcacaggt
841 ttgaaagaga agacgtggac gacatcaagg tccactcacc ttacgaaatt agcatccgcc
901 agcggtttat tggaaagcca gacatggcct atcgtttgat atctgccaag atgccagagg
961 ttatccccat tttagaagtg cagttcagca agaagatgga gctgttagaa gatgcattgg
1021 tgctcagaag cgcaagaacc tcttcccccg cagagaagag ctgctcagtc tggcatgcag
1081 catctgggct gatgggccgt accctgcacc gtgagccacc cgcaggagac caggagggca
1141 cagcactgca cctgcagaca agcctgccag ccctttctga ggcagatacc caggaactaa
1201 cccagatcct gaggaggatg aaggggctgg ccctggaggc cgagagtgag ctggagagac
1261 aagacgaagc cctggatggc gttgcagcag ctgtggacag ggcaaccttg accatcgaca
1321 agcacaacag gcggatgaag aggctgacct aggggcagaa cgtccctgca ttcctgtctc
1381 accctgcaca tcccgctgag atggagggct gggcggcagt gccagggctg cagaggcctg
1441 tggccctccg gagtggtctt cctctggatg gggctgctac tgtggggctg cttctgcacc
1501 aggggcctcc ccaggtgtgc accatgcctg cctcccactt ggctgtccct gctgctgggc
1561 aggacccggc cacatgttct gcggatgctg cagaagtgtg gaccatggcg ggaccccaag
1621 gacacttggc acaggcctgg aagaggccgc cctcgtcttg tctcggctcc ctttcatgga
1681 cagactggcc ttcttagctg tactataaat ttgtgagtga agttagagcc cagctcactt
1741 agccagctca ctttgagggc atcctataaa cacccaactg ttcttttatc gtctcggttt
1801 tagccaaaag tgaaattagc atgactgcat ctttcaaaca aaaatattga tttctgcttt
1861 tagggccccg tttccatcca gacataaagg gaaatgctgg cttcaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aaaa
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