LOCUS BC007746 2031 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PBX/knotted 1 homeobox 1, mRNA (cDNA clone MGC:12791
IMAGE:4099156), complete cds.
ACCESSION BC007746
VERSION BC007746.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2031)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2031)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007746.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37595550.
FEATURES Location/Qualifiers
source 1..2031
/db_xref="H-InvDB:HIT000033418"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12791 IMAGE:4099156"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2031
/gene="PKNOX1"
/gene_synonym="pkonx1c"
/gene_synonym="PREP1"
/db_xref="GeneID:5316"
/db_xref="HGNC:HGNC:9022"
/db_xref="MIM:602100"
CDS 19..1329
/gene="PKNOX1"
/gene_synonym="pkonx1c"
/gene_synonym="PREP1"
/codon_start=1
/product="PBX/knotted 1 homeobox 1"
/protein_id="AAH07746.1"
/db_xref="GeneID:5316"
/db_xref="HGNC:HGNC:9022"
/db_xref="MIM:602100"
/translation="MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPP
VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEK
EGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLL
SGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVV
TPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRS
WLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK
KTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLSSDGAT
LAVQQVMMAGQSEDESVDSTEEDAGALAPAHISGLVLENSDSLQ"
BASE COUNT 581 a 451 c 496 g 503 t
ORIGIN
1 ataaaactct gatgaaccat gatggctaca cagacattaa gtatagacag ctatcaagat
61 gggcaacaga tgcaagtagt aacagagtta aagacagaac aagatccaaa ctgctctgaa
121 cccgatgcag aaggagtgag ccctccccct gtggagtctc agaccccgat ggatgtggac
181 aagcaggcca tttataggca tccactattt ccattattag ctttgttgtt tgaaaaatgt
241 gaacaatcta cacagggctc tgaaggcaca acttctgcca gttttgatgt agacatcgaa
301 aattttgtaa gaaagcaaga gaaggaaggg aaacctttct tttgtgaaga tccagaaacc
361 gataatttaa tggtaaaagc aatccaggtt ttgcgcattc atcttcttga gctggaaaag
421 gttaacgaac tctgcaaaga tttctgcagt cgatacattg cttgtctgaa aacaaaaatg
481 aacagtgaaa ctctgttgag tggagagcct ggaagcccgt actcaccagt gcagtcccag
541 cagattcaaa gtgccatcac aggcaccatc agccctcagg gaattgtggt gccggcgtcc
601 gcgctgcagc agggaaacgt agccatggcg acggtggcag gtggcacagt gtatcagcct
661 gtcacggtcg tcactcccca aggccaagtg gtcacacaga cattgtcgcc tgggacaatt
721 aggatccaga actcccagct tcagttacag ttaaaccaag atctcagcat cttgcatcaa
781 gatgatggtt catctaagaa caagaggggc gtcctgccaa agcatgccac gaacgtgatg
841 cggtcctggc tcttccagca catcgggcat ccctacccaa cagaggatga gaaaaaacag
901 attgctgctc agacaaattt gacactactc caagtcaaca actggttcat caatgccaga
961 agacgaattc ttcagccaat gttggattca agttgttcag agacccccaa aacaaagaaa
1021 aaaactgctc agaaccggcc agttcagagg ttttggcctg attctattgc atcaggagtc
1081 gcacagccac cgccgagcga gctcaccatg tcggaaggag ctgttgtcac catcaccacg
1141 cccgtgaaca tgaacgtgga cagccttcag tctctgtcct cggacggggc caccctggcg
1201 gtgcagcagg tcatgatggc agggcagagc gaggacgagt ctgtggacag cacagaggag
1261 gatgcgggtg ccctggcccc tgcccacatc agcgggctgg tcttggagaa cagtgactcc
1321 ctgcagtagg ggcaggagca gacgcacctg actttttgga gtttgcacag caaacatttt
1381 acacagtttt atttctaata tgttttatat gtagatatag aagagtgcac ttttgtattt
1441 catagtaagc ttaaagcgcg tctttgccgg tgcagcgact tctttcaagt gtgtgtgtgt
1501 gtgtgtgtgt gcgtgtgtgc gtgtgtgtgg atttttaaag aaattcttta aaggtttaac
1561 gctagattgt gaggaatgac acaccactcc ctccccacct tgaatcccta attagattaa
1621 ggaatagcgc tgccattttc taaaccgtga tgcggttgtc acttagttct gtggttccag
1681 cagatctcag tgggctggtt gatttgtgtg gcccatggat ttgaaagaag ctgctgcacc
1741 cgaaactgcc agtgtgcggt gacaacggca cacgcctaga ctgagtgtgg tttcgtcgtg
1801 agtggatgga cggcaagctt agcaagccta agtcccctca tgttcagtga gcctgtttca
1861 tttgctatat agaaaaagaa actcctattt ttaccttgct ggaattattg gataaaaaag
1921 ctatttttat aaattcgtta tgaattggat gatgactata ttgaggataa aatttctaga
1981 gaagaaacaa tacatgcttg ctattaatat ttcaaaaaaa aaaaaaaaaa a
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