LOCUS BC007713 3056 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, N, mRNA
(cDNA clone IMAGE:4130827), partial cds.
ACCESSION BC007713
VERSION BC007713.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3056)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3056)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007713.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: i Column: 7.
FEATURES Location/Qualifiers
source 1..3056
/db_xref="H-InvDB:HIT000033395"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4130827"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3056
/gene="PTPRN"
/gene_synonym="IA-2"
/gene_synonym="IA-2/PTP"
/gene_synonym="IA2"
/gene_synonym="ICA512"
/gene_synonym="R-PTP-N"
/db_xref="GeneID:5798"
/db_xref="MIM:601773"
CDS <1..2436
/gene="PTPRN"
/gene_synonym="IA-2"
/gene_synonym="IA-2/PTP"
/gene_synonym="IA2"
/gene_synonym="ICA512"
/gene_synonym="R-PTP-N"
/codon_start=1
/product="PTPRN protein"
/protein_id="AAH07713.2"
/db_xref="GeneID:5798"
/db_xref="MIM:601773"
/translation="ASSSLSPLQAELLPPLLEHLLLPPQPPHPSLSYEPALLQPYLFH
QFGSRDGSRVSEGSPGMVSVGPLPKAEAPALFSRTASKGIFGDHPGHSYGDLPGPSPA
QLFQDSGLLYLAQELPAPSRARVPRLPEQGSSSRAEDSPEGYEKEGLGDRGEKPASPA
VQPDAALQRLAAVLAGYGVELRQLTPEQLSTLLTLLQLLPKGAGRNPGGVVNVGADIK
KTMEGPVEGRDTAELPARTSPMPGHPTASPTSSEVQQVPSPVSSEPPKAARPPVTPVL
LEKKSPLGQSQPTVAGQPSARPAAEEYGYIVTDQKPLSLAAGVKLLEILAEHVHMSSG
SFINISVVGPALTFRIRHNEQNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQREEA
AAVLPQTAHSTSPMRSVLLTLVALAGVAGLLVALAVALCVRQHARQQDKERLAALGPE
GAHGDTTFEYQDLCRQHMATKSLFNRAEGPPEPSRVSSVSSQFSDAAQASPSSHSSTP
SWCEEPAQANMDISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGN
IKKNRHPDFLPYDHARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIA
DFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPDEGASLYHVYEVNLVSEHIWCEDFL
VRSFYLKNVQTQETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSCPIIVH
CSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAV
AEEVNAILKALPQ"
misc_feature 1621..2406
/gene="PTPRN"
/gene_synonym="IA-2"
/gene_synonym="IA-2/PTP"
/gene_synonym="IA2"
/gene_synonym="ICA512"
/gene_synonym="R-PTP-N"
/note="PTPc; Region: Protein tyrosine phosphatase,
catalytic domain"
/db_xref="CDD:smart00194"
BASE COUNT 625 a 997 c 877 g 557 t
ORIGIN
1 gccagctcct ctctgtcccc tctgcaggct gagctgctcc cgcctctctt ggagcacctg
61 ctgctgcccc cacagcctcc ccacccttca ctgagttacg aacctgcctt gctgcagccc
121 tacctgttcc accagtttgg ctcccgtgat ggctccaggg tctcagaggg ctccccaggg
181 atggtcagtg tcggccccct gcccaaggct gaagcccctg ccctcttcag cagaactgcc
241 tccaagggca tatttgggga ccaccctggc cactcctacg gggaccttcc agggccttca
301 cctgcccagc tttttcaaga ctctgggctg ctctatctgg cccaggagtt gccagcaccc
361 agcagggcca gggtgccaag gctgccagag caagggagca gcagccgggc agaggactcc
421 ccagagggct atgagaagga aggactaggg gatcgtggag agaagcctgc ttccccagct
481 gtgcagccag atgcggctct gcagaggctg gccgctgtgc tggcgggcta tggggtagag
541 ctgcgtcagc tgacccctga gcagctctcc acactcctga ccctgctgca gctactgccc
601 aagggtgcag gaagaaatcc gggaggggtt gtaaatgttg gagctgatat caagaaaaca
661 atggaggggc cggtggaggg cagagacaca gcagagcttc cagcccgcac atcccccatg
721 cctggacacc ccactgccag ccctacctcc agtgaagtcc agcaggtgcc aagccctgtc
781 tcctctgagc ctcccaaagc tgccagaccc cctgtgacac ctgtcctgct agagaagaaa
841 agcccactgg gccagagcca gcccacggtg gcaggacagc cctcagcccg cccagcagca
901 gaggaatatg gctacatcgt cactgatcag aagcccctga gcctggctgc aggagtgaag
961 ctgctggaga tcctggctga gcatgtgcac atgtcctcag gcagcttcat caacatcagt
1021 gtggtgggac cagccctcac cttccgcatc cggcacaatg agcagaacct gtctttggct
1081 gatgtgaccc aacaagcagg gctggtgaag tctgaactgg aagcacagac agggctccaa
1141 atcttgcaga caggagtggg acagagggag gaggcagctg cagtccttcc ccaaactgcg
1201 cacagcacct cacccatgcg ctcagtgctg ctcactctgg tggccctggc aggtgtggct
1261 gggctgctgg tggctctggc tgtggctctg tgtgtgcggc agcatgcgcg gcagcaagac
1321 aaggagcgcc tggcagccct ggggcctgag ggggcccatg gtgacactac ctttgagtac
1381 caggacctgt gccgccagca catggccacg aagtccttgt tcaaccgggc agagggtcca
1441 ccggagcctt cacgggtgag cagtgtgtcc tcccagttca gcgacgcagc ccaggccagc
1501 cccagctccc acagcagcac cccgtcctgg tgcgaggagc cggcccaagc caacatggac
1561 atctccacgg gacacatgat tctggcatac atggaggatc acctgcggaa ccgggaccgc
1621 cttgccaagg agtggcaggc cctctgtgcc taccaagcag agccaaacac ctgtgccacc
1681 gcgcaggggg agggcaacat caaaaagaac cggcatcctg acttcctgcc ctatgaccat
1741 gcccgcataa aactgaaggt ggagagcagc ccttctcgga gcgattacat caacgccagc
1801 cccattattg agcatgaccc tcggatgcca gcctacatag ccacgcaggg cccgctgtcc
1861 cataccatcg cagacttctg gcagatggtg tgggagagcg gctgcaccgt catcgtcatg
1921 ctgaccccgc tggtggagga tggtgtcaag cagtgtgacc gctactggcc agatgagggt
1981 gcctccctct accacgtata tgaggtgaac ctggtgtcgg agcacatctg gtgcgaggac
2041 tttctggtgc ggagcttcta cctgaagaac gtgcagaccc aggagacgcg cacgctcacg
2101 cagttccact tcctcagctg gccggcagag ggcacaccgg cctccacgcg gcccctgctg
2161 gacttccgca ggaaggtgaa caagtgctac cggggccgct cctgccccat catcgtgcac
2221 tgcagtgatg gtgcggggag gaccggcacc tacatcctca tcgacatggt cctgaaccgc
2281 atggcaaaag gagtgaagga gattgacatc gctgccaccc tggagcatgt ccgtgaccag
2341 cggcctggcc ttgtccgctc taaggaccag tttgaatttg ccctgacagc cgtggcggag
2401 gaagtgaatg ccatcctcaa ggccctgccc cagtgagacc ctggggcccc ttggcgggca
2461 gcccagcctc tgtccctctt tgcctgtgtg agcatctctg tgtacccact cctcactgcc
2521 ccaccagcca cctcttgggc atgctcagcc cttcctagaa gagtcaggaa gggaaagcca
2581 gaaggggcac gcctgcccag cctcgcatgc cagagcctgg ggcatcccag agcccagggc
2641 atcccatggg ggtgctgcag ccaggaggag aggaaaggac atgggtagca attctaccca
2701 gagccttctc ctgcctacat tccctggcct ggctctcctg tagctctcct ggggttctgg
2761 gagttccctg aacatctgtg tgtgtccccc tatgctccag tatggaagaa tggggtggag
2821 ggtcgccaca cccggctccc cctgcttctc agccccgggc ctgcctctga ctcacacttg
2881 ggcgctctgc cctccctggc ctcacgccca gcctcctccc accaccctcc caccatgcgc
2941 tgctcaacct ctctccttct ggcgcaagag aacatttcta gaaaaaacta cttttgtacc
3001 agtgtgaata aagttagtgt gttgtctgtg cagctgcaaa aaaaaaaaaa aaaaaa
//