LOCUS BC007704 675 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synaptojanin 2 binding protein, mRNA (cDNA clone
MGC:10277 IMAGE:3952366), complete cds.
ACCESSION BC007704
VERSION BC007704.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC007704.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922963.
FEATURES Location/Qualifiers
source 1..675
/db_xref="H-InvDB:HIT000033389"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10277 IMAGE:3952366"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..675
/gene="SYNJ2BP"
/gene_synonym="Arip2"
/gene_synonym="FLJ11271"
/gene_synonym="OMP25"
/db_xref="GeneID:55333"
/db_xref="HGNC:HGNC:18955"
/db_xref="MIM:609411"
CDS 30..467
/gene="SYNJ2BP"
/gene_synonym="Arip2"
/gene_synonym="FLJ11271"
/gene_synonym="OMP25"
/codon_start=1
/product="synaptojanin 2 binding protein"
/protein_id="AAH07704.1"
/db_xref="GeneID:55333"
/db_xref="HGNC:HGNC:18955"
/db_xref="MIM:609411"
/translation="MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYV
SRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV
QNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL"
BASE COUNT 189 a 160 c 164 g 162 t
ORIGIN
1 caagtaggaa gccagacgag ctgtaaaaca tgaacggaag agtggattat ttggtcactg
61 aggaagagat caatcttacc agagggccct cagggctggg cttcaacatc gtcggtggga
121 cagatcagca gtatgtctcc aacgacagtg gcatctacgt cagccgcatc aaagaaaatg
181 gggctgcggc cctggatggg cggctccagg agggtgataa gatcctttcg gtaaatggcc
241 aagacctaaa gaacctgctg caccaggatg ctgtagacct ctttcgtaat gcaggctatg
301 ctgtgtctct gagagtgcag cacaggttac aggtgcagaa tggacctata ggacatcgag
361 gtgaagggga cccaagtggt attcccatat ttatggtgct ggtgccagtg tttgccctca
421 ccatggtagc agcctgggct ttcatgagat accggcaaca actttgaaaa acttgctctc
481 tttcaatact cccaatgaag atacatttca ctcaccctcc acccctgcta ttctgccatg
541 tctttccctc tctctgcata gccagatttg aagtgactga tacccacccc aaaccttgct
601 gttcacagtc tccaattctt catattctaa tgggaaagta aaggtattgt ttgaaggaaa
661 aaaaaaaaaa aaaaa
//