LOCUS BC007664 1292 bp mRNA linear HUM 08-DEC-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 78, mRNA (cDNA clone
MGC:866 IMAGE:3140172), complete cds.
ACCESSION BC007664
VERSION BC007664.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1292)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1292)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC007664.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: e Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7706556.
FEATURES Location/Qualifiers
source 1..1292
/db_xref="H-InvDB:HIT000033364"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:866 IMAGE:3140172"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1292
/gene="C9orf78"
/gene_synonym="bA409K20.3"
/gene_synonym="HSPC220"
/db_xref="GeneID:51759"
/db_xref="HGNC:HGNC:24932"
CDS 26..895
/gene="C9orf78"
/gene_synonym="bA409K20.3"
/gene_synonym="HSPC220"
/codon_start=1
/product="chromosome 9 open reading frame 78"
/protein_id="AAH07664.1"
/db_xref="GeneID:51759"
/db_xref="HGNC:HGNC:24932"
/translation="MPVVRKIFRRRRGDSESEEDEQDSEEVRLKLEETREVQNLRKRP
NGVSAVALLVGEKVQEETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSF
SAETNRRDEDADMMKYIETELKKRKGIVEHEEQKVKPKNAEDCLYELPENIRVSSAKK
TEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMA
VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD
YHYEKFKKMNRRY"
BASE COUNT 409 a 276 c 372 g 235 t
ORIGIN
1 gctgtacaac tcggccgttg tcaccatgcc ggtcgtccgg aagattttcc gtcgccgccg
61 gggcgactcg gagtcagagg aagatgagca ggactcagag gaggttcgat taaaactgga
121 agagaccaga gaggtacaga acttgaggaa gaggcccaac ggggtgagtg ctgtggcctt
181 gctggtggga gagaaggtac aagaggagac cactctagtg gatgatccct ttcagatgaa
241 gacaggtggt atggtggata tgaagaaact gaaggaaagg ggcaaagata agatcagtga
301 ggaggaggac ctgcacctgg ggacatcgtt ttctgcagaa accaaccgaa gggatgagga
361 tgcagacatg atgaagtaca ttgagacaga gctaaagaag aggaaaggga tcgtggaaca
421 tgaggaacag aaagttaagc caaagaatgc agaggactgt ctttatgaac ttccagaaaa
481 catccgtgtt tcctcagcaa agaagaccga ggagatgctt tccaaccaga tgctgagtgg
541 cattcctgag gtggacctgg gcatcgatgc taaaataaaa aatatcattt ccacggagga
601 tgccaaggcc cgtctgctgg cagagcagca gaacaagaag aaagacagcg agacctcctt
661 cgtgcctacc aacatggctg tgaattatgt gcagcacaac agattttatc atgaggagct
721 caacgcgccc atacggagaa acaaagaaga gcccaaggcc cggcccttga gagtaggtga
781 cacggagaag ccagagcctg agcggtcccc tcctaaccgc aagcgtcctg ctaacgagaa
841 ggcaactgat gactatcatt atgagaagtt caagaaaatg aataggcggt actgagttgt
901 gcagagtggg atgtaaatat cgccttcctc tccctatatc cctcccatga aaaatggctt
961 cctggccggg cgtggtggct cctgcctgta atcccagcac tttgggaggc cgaggtgggc
1021 ggatcacctg aggtcgggag tttgagacca gcctgaccaa catggagaaa cccagtctct
1081 actgaaaata cagaaaagtt agccaggcgt ggtggcacat gcctgtaatc ccagctgctc
1141 aggaggctga ggcaggagaa ttgcttgaac ccaagaggcg gaggttgtgg tgagccgaga
1201 ttgcaccttt gtactccagc ctgggcaacg agcaaaaaac tctgtctcaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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