LOCUS BC007634 2895 bp mRNA linear HUM 01-JUN-2004
DEFINITION Homo sapiens leucine-rich repeats and calponin homology (CH) domain
containing 4, mRNA (cDNA clone IMAGE:3528313), partial cds.
ACCESSION BC007634
VERSION BC007634.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2895)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2895)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: g Column: 11.
FEATURES Location/Qualifiers
source 1..2895
/db_xref="H-InvDB:HIT000086871"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3528313"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2895
/gene="LRCH4"
/gene_synonym="LRN"
/gene_synonym="LRRN1"
/gene_synonym="LRRN4"
/db_xref="GeneID:4034"
CDS <1..1744
/gene="LRCH4"
/gene_synonym="LRN"
/gene_synonym="LRRN1"
/gene_synonym="LRRN4"
/codon_start=2
/product="LRCH4 protein"
/protein_id="AAH07634.1"
/db_xref="GeneID:4034"
/translation="RCLNPALGNLTALTYLNLSRNQLSLLPPYICQLPLRVLIVSNNK
LGALPPDIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRNQLSTLPEELGDLP
LVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAG
QRGSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTDEF
SELSFRISELAREPRGPRERKEDGSADGDPVQIDFIDSHVPGEDEERGTVEEQRPPEL
SPGAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPG
LRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPASQEPLPIAGPATAPAP
RPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDLMTQLRQVLESRLQ
RPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKARKNVESFLEAC
RKMGVPEADLCSPSDLLQGTARGLRTALEAMKRVGGKALPPLWPPSGLGGFVVFYVVL
MLLLYVTYTRLLGS"
BASE COUNT 532 a 989 c 850 g 524 t
ORIGIN
1 gagatgcctg aacccagcct tggggaatct cacagccctc acctacctca acctcagccg
61 aaaccagctg tcgctgctgc caccctacat ctgccagctg cccctgaggg tcctcatcgt
121 cagcaacaac aagctgggag ccctgccccc tgacatcggc accctgggaa gcctgcgaca
181 gcttgacgtg agcagcaacg agctccaatc cctgccctcg gaactgtgtg gcctctcttc
241 cctgcgggac ctcaatgtcc ggaggaacca gctcagtacg ctgcccgaag agctggggga
301 cctccctctg gtccgcctgg atttctcctg taaccgcgtc tcccgaatcc cagtctcctt
361 ctgccgcctg aggcacctgc aggtcattct gctggacagc aaccctctgc agagtccacc
421 tgcccaggtc tgcctgaagg ggaaacttca catcttcaag tatttgtcca cagaggccgg
481 gcagcgtggg tcggccctgg gggacctggc cccttctcgg cccccgagtt tcagtccctg
541 ccctgcagag gatctatttc cgggacatcg gtacgatggt gggctggact caggcttcca
601 cagcgttgat agtggcagca agaggtggtc tggaaatgag tcaacagatg aattttcaga
661 gctgtcattc cggatctcag agctggcccg ggagccccgg gggcccagag aacgcaagga
721 ggatggctca gcggacggag accctgtgca gattgacttc atcgacagcc atgtccccgg
781 ggaggatgaa gagcgaggca ctgtggagga gcagcgacca cccgaattaa gccctggggc
841 aggggacagg gagagggcac caagcagcag gcgggaggag ccggcagggg aggagcggcg
901 gcgcccggac accttgcagc tgtggcagga gcgggaacgg cggcagcagc agcagagcgg
961 ggcgtggggg gccccgagga aggatagcct cttgaagcca gggctcaggg ctgttgtggg
1021 aggggccgcc gccgtgtcca ctcaagccat gcacaacggc tcgcctaagt ccagtgcctc
1081 ccaagcaggg gctgcagcgg ggcagggagc ccccgcccct gcccctgcct cccaagagcc
1141 ccttcccata gctggaccag cgacagcacc tgctccacgg ccacttggct ccattcagag
1201 accaaacagc ttcctcttcc gttcctcctc tcagagtggc tcaggccctt cctcaccaga
1261 ctctgtcctg agacctcggc ggtaccccca ggttccagat gagaaggact taatgactca
1321 gctgcgccag gtccttgagt cccggctgca gcggcccctg cctgaggacc tggccgaggc
1381 tctggccagt ggggtcatcc tgtgccagct ggccaaccag ctacggccgc gctccgtgcc
1441 cttcatccat gtgccctccc ctgctgtgcc aaaactcagt gccctcaagg ctcggaagaa
1501 tgtggagagt tttctagaag cctgtcgaaa aatgggggtg cctgaggctg acctgtgctc
1561 gccctcggat ctcctccagg gcactgcccg ggggctgcgg accgcgctgg aggccatgaa
1621 gcgggtgggg ggcaaggccc taccgcccct ctggcccccc tctggtctgg gcggcttcgt
1681 cgtcttctac gtggtcctca tgctgctgct ctatgtcacc tacactcggc tcctgggttc
1741 ctaggcccca aaatcggccc tccctcaccc ctttcccttc ctctctattt ataaggtccc
1801 tgctccaccc gaccccacct gcggtgcctt cagccccaac caaagacact agtgcacccc
1861 cttcacagac actgacctca gaggccccac tctggtgccc ccagaccctg ggcccccagc
1921 ctctggcctc cctccagtag ccccacgagt ccccacctct cagtgctgac ggtgccttca
1981 tgtccccgcc ggccctgccc ctgccctctg taccccgtga ggggtggcag gagctggagt
2041 ctcccccttc ctcctgtgcc ctccccttcc ccccccaaca gctgctatgg gggggctaaa
2101 ttatctctat tttgtagaga ggatctatat ttgtaggggt tcggggccca ggccgggtcc
2161 ctatctctgt gtataaactg tacagaccgt ggccgccctg cctgtgtgtg tgtgtgtgcg
2221 cgcgcgcgcg cgtctgctcc gcgtgttggt ggctgtggcc atggctctgt gcccaccagc
2281 atctccctcc tgagatgccg gcctctcatg ctcccggagc gtccgccaac cccccgtgtc
2341 acctcccttc tgttatcgct gacagctttc ttgcgtctca tttgtcgccg agccccgagc
2401 gcacggtgat gctcgggtct gcccccgacc ccctgccaca ggccggaagc cgcagggggc
2461 accgtgggga agctaacccg gccccttccc ccaggagtca ctgtgccagc cccaccacat
2521 cctggaagag gagggggccc cgggaagggg cctcccctac atcgctgctg tcgtccacgc
2581 cctgctggac cggccttagg ggtgaaggtg ggggcacagg gcccaccccg cccgggaccc
2641 cgggagcaga agacgcgcct gggctccgcg ctctcagaga agcacgtggt gagggtggcc
2701 tgggcctggg cacccttggc ctgccggcct ggctgcctct ggggtcgagg gtctgggtgg
2761 aaggaccgcg ggtgtcgcag gtgtcgtgtc agccgcaata aacagaagcc agaagccctc
2821 tgggtggccc tcagaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaaaaa aaaaa
//