LOCUS BC007610 2108 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens splicing factor 3b, subunit 2, 145kDa, mRNA (cDNA
clone MGC:15693 IMAGE:3351485), complete cds.
ACCESSION BC007610
VERSION BC007610.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2108)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2108)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: n Column: 4.
FEATURES Location/Qualifiers
source 1..2108
/db_xref="H-InvDB:HIT000033330"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15693 IMAGE:3351485"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2108
/gene="SF3B2"
/gene_synonym="SAP145"
/gene_synonym="SF3b1"
/gene_synonym="SF3B145"
/gene_synonym="SF3b150"
/db_xref="GeneID:10992"
/db_xref="MIM:605591"
CDS 1..1911
/gene="SF3B2"
/gene_synonym="SAP145"
/gene_synonym="SF3b1"
/gene_synonym="SF3B145"
/gene_synonym="SF3b150"
/codon_start=1
/product="SF3B2 protein"
/protein_id="AAH07610.1"
/db_xref="GeneID:10992"
/db_xref="MIM:605591"
/translation="MDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDARSS
LGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGSD
SPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAP
KKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEM
HDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQE
MREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYE
GKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIP
GLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWG
ELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELR
KKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVE
VALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS
RGGSKKYKEFKF"
misc_feature 586..1323
/gene="SF3B2"
/gene_synonym="SAP145"
/gene_synonym="SF3b1"
/gene_synonym="SF3B145"
/gene_synonym="SF3b150"
/note="CUS1; Region: COG5182, CUS1, Splicing factor 3b,
subunit 2 [RNA processing and modification]"
/db_xref="CDD:COG5182"
BASE COUNT 636 a 484 c 598 g 390 t
ORIGIN
1 atggatgacc cctctgtggg ccccaagatc ccccaggctt tggagaagat cctgcagctg
61 aaggagagcc gccaggaaga gatgaattct cagcaggagg aagaggaaat ggaaacagat
121 gctcgctcgt ccctgggcca gtcagcgtca gagactgagg aggacacagt gtccgtatct
181 aaaaaggaga aaaaccggaa gcgtaggaac cgaaagaaga agaaaaagcc ccagcgggtg
241 cgaggggtgt cctctgagag ctctggggac cgggagaaag actcaacccg gtcccgtggc
301 tctgattccc cagcagctga tgttgagatt gagtatgtga ctgaagaacc tgaaatttac
361 gagcccaact ttatcttctt taagaggatc tttgaggctt ttaagctcac tgatgatgtg
421 aagaaggaga aagagaaaga gccagagaaa cttgacaaac tggagaactc tgcagccccc
481 aagaagaagg gatttgaaga ggagcacaag gacagtgatg atgacagcag tgatgacgag
541 caggaaaaga agccagaagc ccccaagctg tccaagaaga agttgcgccg aatgaaccgc
601 ttcactgtgg ctgaactcaa gcagctggtg gctcggcccg atgtcgtgga gatgcacgat
661 gtgacagcgc aggaccctaa gctcttggtt cacctcaagg ccactcggaa ctctgtgcct
721 gtgccacgcc actggtgttt taagcgcaaa tacctgcagg gcaaacgggg cattgagaag
781 ccccccttcg agctgccaga cttcatcaaa cgcacaggca tccaggagat gcgagaggcc
841 ctgcaggaga aggaagaaca gaagaccatg aagtcaaaaa tgcgagagaa agttcggcct
901 aagatgggca aaattgacat cgactaccag aaactgcatg atgccttctt caagtggcag
961 accaagccaa agctgaccat ccatggggac ctgtactatg aggggaagga gttcgagaca
1021 cgactgaagg agaagaagcc aggagatctg tctgatgagc taaggatttc cttggggatg
1081 ccagtaggac caaatgccca caaggtccct cccccatggc tgattgccat gcagcgatat
1141 ggaccacccc catcgtatcc caacctgaaa atccctgggc tgaactcgcc catccctgag
1201 agctgttcct ttgggtacca tgctggtggc tggggcaaac ctccagtgga tgagactggg
1261 aaaccgctct atggggacgt gtttggaacc aatgctgctg aatttcagac caagactgag
1321 gaagaagaga ttgatcggac cccttggggg gaactggaac catctgatga agaatcctca
1381 gaagaagagg aagaggaaga aagtgatgaa gacaaaccag atgagacagg ctttattacc
1441 cctgcagaca gtggccttat cactcctgga ggcttttcat cagtgcctgc tggaatggag
1501 acccctgaac tcattgagct gaggaagaag aagattgagg aggcgatgga cggaagtgag
1561 acacctcagc tcttcactgt gttgccagag aagagaacag ccactgttgg aggggccatg
1621 atgggatcaa cccacattta tgacatgtcc acggttatga gccggaaggg cccggctcct
1681 gagctgcaag gtgtggaagt ggcgctggcg cctgaagagt tggagctgga tcctatggcc
1741 atgacccaga agtatgagga gcatgtgcgg gagcagcagg ctcaagtaga gaaggaggac
1801 ttcagtgaca tggtggctga gcacgctgcc aaacagaagc aaaaaaaacg gaaagctcag
1861 ccccaggaca gccgtggggg cagcaagaaa tataaggagt tcaagtttta ggtcccctca
1921 cactagccct ttttttggcc ctacgtctgg atgcctgggc ttcacacaag aaccacctct
1981 cccgcagttc ccaaggactt gtcatttcat gttcttattt tagacctgtt ttgtaaataa
2041 agctgtttcc caaggaaaga gatgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaa
//