LOCUS BC007588 1512 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens splA/ryanodine receptor domain and SOCS box containing
3, mRNA (cDNA clone MGC:15611 IMAGE:3342825), complete cds.
ACCESSION BC007588
VERSION BC007588.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1512)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1512)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: j Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38679885.
FEATURES Location/Qualifiers
source 1..1512
/db_xref="H-InvDB:HIT000086854"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15611 IMAGE:3342825"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1512
/gene="SPSB3"
/gene_synonym="SSB3"
/db_xref="GeneID:90864"
/db_xref="HGNC:HGNC:30629"
CDS 38..1105
/gene="SPSB3"
/gene_synonym="SSB3"
/codon_start=1
/product="splA/ryanodine receptor domain and SOCS box
containing 3"
/protein_id="AAH07588.2"
/db_xref="GeneID:90864"
/db_xref="HGNC:HGNC:30629"
/translation="MARRPRNSRAWHFVLSAARRDADARAVALAGSTNWGYDSDGQHS
DSDSDPEYSTLPPSIPSAVPVTGESFCDCAGQSEASFCSSLHSAHRGRDCRCGEEDEY
FDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGEGQHFWEIKMTSPVY
GTDMMVGIGTSDVDLDKYRHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGS
IIGVHLDTWHGTLTFFKNRKCIGVAATKLQNKRFYPMVCSTAARSSMKVTRSCASATS
LQYLCCHRLRQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMSCSRRKAPVSDPQAA
TSAHPSSREPRPCQRKRCRRT"
BASE COUNT 292 a 486 c 460 g 274 t
ORIGIN
1 gcggagcgcg cagcgggggc tgcagattct ttccaccatg gccagacgcc cccggaacag
61 cagggcctgg cacttcgtcc tgagtgcagc ccgccgagac gcagatgccc gggccgtggc
121 tctagcaggc tccactaact ggggctacga ctctgatggg cagcacagcg actcggactc
181 cgaccccgag tactccacgc tgccgccatc catccccagt gcggtgcccg tgaccggcga
241 gtccttctgt gactgtgctg ggcagagcga ggcctccttc tgtagcagcc tgcactcggc
301 ccaccggggc agggactgcc gctgcggaga ggaagacgag tatttcgact gggtctggga
361 tgacttaaat aagtcatcag ccaccctgct gagctgtgac aaccgtaagg tcagcttcca
421 catggagtac agctgcggca cagcggccat ccggggcacc aaggagctgg gggagggcca
481 gcacttctgg gagatcaaga tgacctctcc cgtctacggc accgacatga tggtgggcat
541 cgggacgtcg gatgtggacc tggacaaata ccgccacacg ttctgcagcc tgctgggcag
601 ggatgaggac agctggggcc tctcctacac gggcctcctc caccacaagg gcgacaagac
661 cagcttctcg tcgcggttcg gccagggctc catcattggc gtgcacctgg acacctggca
721 cggcacactc acctttttca agaacaggaa gtgtataggt gtggcagcca ccaagctgca
781 gaacaagaga ttctacccga tggtgtgctc cacggcggcc cggagcagca tgaaggtcac
841 ccgctcctgt gccagcgcca cttccctcca gtacctgtgc tgccaccgcc tgcgccagct
901 gcggccagac tcgggagaca cgctggaggg tctgccgctg ccgccgggcc tcaagcaggt
961 gctacacaac aagctgggct gggtcctgag catgagttgc agccgccgca aggctccagt
1021 gtccgatccc caggcagcga cctccgccca ccccagcagt cgcgagcctc ggccctgcca
1081 gaggaagcgc tgccgccgga cctgactgac ttcccagtgg aactgccttc ttgggctggg
1141 acagcccctt tcctctgtcc cttctttctc tgtcccttcc ttccagccac actccagggc
1201 ggagttggat gaggcccgtc cggagggagc catctcttgc tcccgaggct gggacagtcc
1261 tttctgtggg ggctctaggg cccctctgct gctgtgctgg gtggggaagc ggctgccctg
1321 agccccaggt cttgtgggag gctgcgagga cgagagcctg gctggagccc gcgttgctgt
1381 tcccacaggg cctcggtttt tcctaacttg ctctgcatgc tgtcagcggc tgccccgccg
1441 tcatagactt aaaggactgc aataaatgta gagttgatgt ctaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aa
//