LOCUS BC007586 1456 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens Src homology 2 domain containing F, mRNA (cDNA clone
IMAGE:3162799), partial cds.
ACCESSION BC007586
VERSION BC007586.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1456)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1456)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: j Column: 19.
FEATURES Location/Qualifiers
source 1..1456
/db_xref="H-InvDB:HIT000086852"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3162799"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1456
/gene="SHF"
/db_xref="GeneID:90525"
CDS <1..704
/gene="SHF"
/codon_start=3
/product="SHF protein"
/protein_id="AAH07586.1"
/db_xref="GeneID:90525"
/translation="QKMMAEIRGSKETATQPLPLYDTPYEPEEDGATPEGEGAPWPRE
SRLPEDDERPPEEYDQPWEWKKERISKAFAAQFEGPEKSCLSPGREEKGRLPPRLSAG
NPKSAKPLSMEPSSPLGEWTDPALPLENQVWYHGAISRTDAENLLRLCKEASYLVRNS
ETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEIVHHYASRKLPIKG
AEHMSLLYPVAIRTL"
BASE COUNT 336 a 430 c 451 g 239 t
ORIGIN
1 ctcaaaagat gatggccgag atccggggct ccaaggagac agcaactcag cccttgcctc
61 tgtatgacac accctatgag ccagaggagg atggggccac cccggaaggt gagggggccc
121 cctggccccg ggagtcccgc ctgccagagg atgatgagag gccccctgag gagtatgacc
181 agccctggga gtggaagaag gagcggattt ccaaagcctt tgcagcccag tttgaaggac
241 cggagaagag ctgcctgtca cctggccggg aggagaaggg gcggctacct ccccgactct
301 ctgcagggaa ccccaagtca gccaaacccc taagcatgga gcccagcagc cccctggggg
361 agtggacaga tccagcactg cctctggaaa accaggtctg gtatcacggg gccatcagcc
421 gaaccgacgc cgagaacctg ctccggctgt gcaaagaggc cagctacctg gtgcgcaaca
481 gtgagaccag caagaatgac ttctccctct ccctcaagag cagccaggga ttcatgcaca
541 tgaagctgtc ccgaaccaag gaacacaaat atgtgctggg ccagaacagc ccgcccttca
601 gcagcgtccc tgaaattgtg caccactatg ccagccgcaa gctacccatt aagggagccg
661 aacacatgtc cctgctctac cctgtggcca tccggactct ttagatgtga agccagggca
721 ctgtgataga cctgtaccca gccctgtgcc catcacctgg ctgagggctg tggctcttgc
781 cagggacgtg atctttcaaa cctttcttct cctgggatcc agtagaagct ggagattcct
841 taatttattc taaagggaaa gggctcctgg ggccttggag taaggggttg tctggagctg
901 gggaaagagg aatccctgga gagaaaggat agcccctgga ggaagggggt tccagagcta
961 ctgggatggt agggagtttc agactggcag ctccggctcc tttccgacct tagggcagag
1021 gtggtgacct ccaccaccac caccctctcc ccactgggtc cgtgcgaggt agtgcagaat
1081 tcggcccctt ggggcgcctt accacctctc tgcctccgtc cccgacttcc accccagacc
1141 gtcggagggc tccgcccaga gtctggtaag aggtttgggg aagacaggcc cctgggaagc
1201 agccggcttt ggggggtggg gagagaaggg gaggggctcg ggcagaggga actgtgcagt
1261 ccccaggccg ccccggctcc gggctagagg caataaataa acccgatcct gccgggcaca
1321 gccgcgcccg cgcctccggc gccgtccccg ggctgacggg ggagggagcg gagaagcgag
1381 cgcagattct gcgtataaat cagctctgga gcagacacag cccggctgtg aaaagcaaaa
1441 aaaaaaaaaa aaaaaa
//