LOCUS BC007578 1977 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens peroxisome proliferator-activated receptor delta, mRNA
(cDNA clone MGC:15560 IMAGE:3139849), complete cds.
ACCESSION BC007578
VERSION BC007578.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1977)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1977)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29171748.
FEATURES Location/Qualifiers
source 1..1977
/db_xref="H-InvDB:HIT000033310"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15560 IMAGE:3139849"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1977
/gene="PPARD"
/gene_synonym="FAAR"
/gene_synonym="MGC3931"
/gene_synonym="NR1C2"
/gene_synonym="NUC1"
/gene_synonym="NUCI"
/gene_synonym="NUCII"
/gene_synonym="PPAR-beta"
/gene_synonym="PPARB"
/db_xref="GeneID:5467"
/db_xref="HGNC:HGNC:9235"
/db_xref="MIM:600409"
CDS 259..1344
/gene="PPARD"
/gene_synonym="FAAR"
/gene_synonym="MGC3931"
/gene_synonym="NR1C2"
/gene_synonym="NUC1"
/gene_synonym="NUCI"
/gene_synonym="NUCII"
/gene_synonym="PPAR-beta"
/gene_synonym="PPARB"
/codon_start=1
/product="PPARD protein"
/protein_id="AAH07578.1"
/db_xref="GeneID:5467"
/db_xref="HGNC:HGNC:9235"
/db_xref="MIM:600409"
/translation="MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTD
LSRSSSPPSLLDQLQMGCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTI
RMKLEYEKCERSCKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGL
TANEGSQYNPQVADLKAFSKHIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIET
LWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLN
DQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEF
AVKFNALELDDSDLALFIAAIILCGGE"
BASE COUNT 504 a 510 c 582 g 381 t
ORIGIN
1 gttttggcag gagcgggaga attctgcgga gcctgcggga cggcggcggt ggcgccgtag
61 gcagccggga cagtgttgta cagtgttttg ggcatgcacg tgatactcac acagtggctt
121 ctgctcacca acagatgaag acagatgcac caacgaggct gatgggaacc atcctgtaga
181 ggtccatctg cgttcagacc cagacgatgc cagagctatg actgggcctg caggtgtggc
241 gccgagggga gatcagccat ggagcagcca caggaggaag cccctgaggt ccgggaagag
301 gaggagaaag aggaagtggc agaggcagaa ggagccccag agctcaatgg gggaccacag
361 catgcacttc cttccagcag ctacacagac ctctcccgga gctcctcgcc accctcactg
421 ctggaccaac tgcagatggg ctgtgacggg gcctcatgcg gcagcctcaa catggagtgc
481 cgggtgtgcg gggacaaggc atcgggcttc cactacggtg ttcatgcatg tgaggggtgc
541 aagggcttct tccgtcgtac gatccgcatg aagctggagt acgagaagtg tgagcgcagc
601 tgcaagattc agaagaagaa ccgcaacaag tgccagtact gccgcttcca gaagtgcctg
661 gcactgggca tgtcacacaa cgctatccgt tttggtcgga tgccggaggc tgagaagagg
721 aagctggtgg cagggctgac tgcaaatgag gggagccagt acaacccaca ggtggccgac
781 ctgaaggcct tctccaagca catctacaat gcctacctga aaaacttcaa catgaccaaa
841 aagaaggccc gcagcatcct caccggcaaa gccagccaca cggcgccctt tgtgatccac
901 gacatcgaga cattgtggca ggcagagaag gggctggtgt ggaagcagtt ggtgaatggc
961 ctgcctccct acaaggagat cagcgtgcac gtcttctacc gctgccagtg caccacagtg
1021 gagaccgtgc gggagctcac tgagttcgcc aagagcatcc ccagcttcag cagcctcttc
1081 ctcaacgacc aggttaccct tctcaagtat ggcgtgcacg aggccatctt cgccatgctg
1141 gcctctatcg tcaacaagga cgggctgctg gtagccaacg gcagtggctt tgtcacccgt
1201 gagttcctgc gcagcctccg caaacccttc agtgatatca ttgagcctaa gtttgaattt
1261 gctgtcaagt tcaacgccct ggaacttgat gacagtgacc tggccctatt cattgcggcc
1321 atcattctgt gtggaggtga gtgagagtgg ggcaggtggg ctggcctggc acacccagtc
1381 gtcctggggg ttggccctca ctgcagggca ctgtgcctga gctctgacag tgtggggaag
1441 tgtccctgtg atcttggcag tggaacatgc aaggcactga ctgagcatgc aggatcagct
1501 ccatctcatt atgtacgtag atagaggtgg agacaggaaa aagactaagc cagacgtggt
1561 ggctcacacc tgtaatccca gcactttggc aggccgaggc gggtggatca cttgaggtca
1621 ggagttcgaa accagcctgg ccaacatggt gaaaccccgt ctctactaaa aatacaaaaa
1681 attagccaga tgtggtggca cgcgcctgta atcccagcta cttgggaggc tgagccagga
1741 gaatcgcttg aacccgaaag gtggaggttg cagtgagcca aaatcccacc actgcactcc
1801 agcctgggtg acagagtgag accctgtctc aaaaaaaagg aaaaggacta acaggcagta
1861 tgctgtcatg ttaatgtggg gtggaaaaat tgtctgcatt ttttctgcat ttttaaaatt
1921 ccaacccaat aaatacaata ataactatgc taaaaaaaaa aaaaaaaaaa aaaaaaa
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