LOCUS BC007577 4220 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA (cDNA clone IMAGE:3139787), partial cds. ACCESSION BC007577 VERSION BC007577.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4220) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4220) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 22 Row: h Column: 20. FEATURES Location/Qualifiers source 1..4220 /db_xref="H-InvDB:HIT000086850" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3139787" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..4220 /gene="SNRNP200" /gene_synonym="BRR2" /gene_synonym="HELIC2" /gene_synonym="U5-200KD" /db_xref="GeneID:23020" /db_xref="HGNC:HGNC:30859" /db_xref="MIM:601664" CDS <1..3927 /gene="SNRNP200" /gene_synonym="BRR2" /gene_synonym="HELIC2" /gene_synonym="U5-200KD" /codon_start=1 /product="SNRNP200 protein" /protein_id="AAH07577.1" /db_xref="GeneID:23020" /db_xref="HGNC:HGNC:30859" /db_xref="MIM:601664" /translation="KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS HGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRML RSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIA SHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPI PVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGW AQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIG ELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEA FWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSC ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVF NTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWY EKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFV VDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS TFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSP MERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDV LQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVT KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI PIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEIL SKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRC TDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG GPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKV KLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD" BASE COUNT 1040 a 1128 c 1102 g 950 t ORIGIN 1 aaaggcaccc aggtgtacag tccagagaag gggcgttgga cagaactggg agcactggac 61 attctgcaga tgctgggacg tgccggaaga ccccagtatg acaccaaggg tgaaggcata 121 ctcatcacat ctcatgggga gctacagtac tacctgtccc tcctcaatca acaacttcct 181 attgaaagcc agatggtttc aaagcttcct gacatgctca atgcagaaat cgtgctagga 241 aatgtccaga atgccaagga tgcggtgaac tggctgggct atgcctacct ctatatccga 301 atgctgcgat ccccaaccct ctatggcatc tctcatgatg acctcaaggg agatcccctg 361 ctggaccagc gccgactaga tctggttcat acagctgccc tgatgctgga caagaacaat 421 ctggtcaagt acgacaagaa gacgggcaac ttccaggtga cagaactggg ccgtatagcc 481 agccactact acatcaccaa tgatacagtg cagacttaca accagctgct gaagcccacc 541 ctgagtgaga ttgagctttt cagggtcttc tcattgtcct ctgagttcaa gaacatcaca 601 gtgagagagg aggagaagct ggagctgcag aagttgctgg agagggtgcc tatccctgta 661 aaggagagca ttgaggaacc cagtgctaag atcaacgttc ttctgcaagc cttcatctca 721 cagctgaaat tggagggctt tgcactgatg gctgacatgg tgtatgtcac acagtcggct 781 ggccggttga tgcgagcgat atttgaaatt gtcctgaacc gaggttgggc acagcttaca 841 gacaagaccc tgaacctctg caagatgatc gacaaacgca tgtggcagtc catgtgtcct 901 ctgcgccagt tccggaaact ccctgaggaa gtagtgaaga agattgagaa gaagaatttc 961 ccctttgagc gtctgtacga cctgaatcat aatgagattg gggagcttat ccgcatgcca 1021 aagatgggga agaccatcca caaatatgtc catctgtttc ccaagttgga gttgtcagtg 1081 cacctgcagc ctatcacacg ctccaccctg aaggtggagc tgaccatcac gccagacttc 1141 cagtgggatg aaaaggtgca tggttcatcc gaggcttttt ggattctggt ggaggatgtg 1201 gacagcgagg tgattctgca ccatgagtat tttctcctca aggccaagta cgcccaggac 1261 gagcacctca ttacattctt cgtgcctgtc tttgaaccgc tgccccctca gtacttcatc 1321 cgagtggtgt ctgaccgctg gctctcttgt gagacccagc tgcctgtctc cttccggcac 1381 ctgatcttgc cggagaagta cccccctcca accgaacttt tggacctgca gcccttgccc 1441 gtgtctgctc tgagaaacag tgcctttgag agtctttacc aagataaatt tcctttcttc 1501 aatcccatcc agacccaggt gtttaacact gtatacaaca gtgacgacaa cgtgtttgtg 1561 ggggccccca cgggcagcgg gaagactatt tgtgcagagt ttgccatcct gcgaatgctg 1621 ctgcagagct cggaggggcg ctgtgtgtac atcaccccca tggaggccct ggcagagcag 1681 gtatacatgg actggtacga gaagttccag gacaggctca acaagaaggt ggtactcctg 1741 acaggcgaga ccagcacaga cctgaagctg ctgggcaaag ggaacattat catcagcacc 1801 cctgagaagt gggacatact ttcccggcga tggaagcagc gcaagaacgt gcagaacatc 1861 aacctcttcg tggtggatga ggtccacctt atcgggggcg agaatgggcc tgtcttagaa 1921 gtgatctgct cccgaatgcg ctacatctcc tcccagattg agcggcccat tcgcattgtg 1981 gcactcagct cttcgctctc caatgccaag gatgtggccc actggctggg ctgcagtgcc 2041 acctccacct tcaacttcca tcccaatgtg cgtcccgtcc ccttggagct gcacatccag 2101 ggcttcaaca tcagccatac acaaacccgc ctgctctcca tggccaagcc tgtgtaccat 2161 gctatcacca agcactcgcc caagaagcct gtcattgtct ttgtgccgtc tcgcaagcag 2221 acccgcctca ctgccattga catcctcacc acctgtgcag cagacatcca acggcagagg 2281 ttcttgcact gcaccgagaa ggatctgatt ccgtacctgg agaagctaag tgacagcacg 2341 ctcaaggaaa cgctgctaaa tggggtgggc tacctgcatg aggggctcag ccccatggag 2401 cgacgcctgg tggagcagct cttcagctca ggggctatcc aggtggtggt ggcttctcgg 2461 agtctctgct ggggcatgaa cgtggctgcc cacctggtaa tcatcatgga tacccagtac 2521 tacaatggca agatccacgc ctatgtggat taccccatct atgacgtgct tcagatggtg 2581 ggccacgcca accgcccttt gcaggacgat gaggggcgct gtgtcatcat gtgtcagggc 2641 tccaagaagg atttcttcaa gaagttctta tatgagccat tgccagtaga atctcacctg 2701 gaccactgta tgcatgacca cttcaatgct gagatcgtca ccaagaccat tgagaacaag 2761 caggatgctg tggactacct cacctggacc tttctgtacc gccgcatgac acagaacccc 2821 aattactaca acctgcaggg catctcccat cgtcacttgt cggaccactt gtcagagctg 2881 gtggagcaga ccctgagtga cctggagcag tccaagtgca tcagcatcga ggacgagatg 2941 gacgtggcgc ctctgaacct aggcatgatc gccgcctact attacatcaa ctacaccacc 3001 attgagctct tcagcatgtc cctcaatgcc aagaccaagg tgcgagggct tatcgagatc 3061 atctccaatg cagcagagta tgagaacatt cccatccggc accatgaaga caatctcctg 3121 aggcagttgg ctcagaaggt cccccacaag ctgaataacc ctaagttcaa tgatccgcac 3181 gtcaagacca acctgctcct gcaggctcac ttgtctcgca tgcagctgag tgctgagttg 3241 cagtcagata cggaggaaat ccttagtaag gcaatccggc ttatccaggc ctgcgtggat 3301 gtcctttcca gcaatgggtg gctcagccct gctctggcag ctatggaact ggcccagatg 3361 gtcacccaag ccatgtggtc caaggactca tacctgaagc agctgccaca cttcacctct 3421 gagcatatca aacgttgcac agacaaggga gtggagagtg ttttcgacat catggagatg 3481 gaggatgaag aacggaacgc gttgcttcag ctgactgaca gccagattgc agatgtggct 3541 cgcttttgta accgctaccc taatatcgaa ctatcttatg aggtggtaga taaggacagc 3601 atccgcagtg gcgggccagt tgtggtgctg gtgcagctgg agcgagagga ggaagtcaca 3661 ggccctgtca ttgcgcctct cttcccgcag aaacgtgaag agggctggtg ggtggtgatt 3721 ggagatgcca agtccaatag cctcatctcc atcaagaggc tgaccttgca gcagaaggcc 3781 aaggtgaagt tggactttgt ggccccagcc actggtgccc acaactacac tctgtacttc 3841 atgagtgacg cttacatggg atgtgaccag gagtacaaat tcagcgtgga tgtgaaagaa 3901 gctgagacag acagtgattc agattgagtc ctgaggcatt tacttttggg taaaggagag 3961 ttgagcctga attaggaatg tgtacattgt aggaatcctg gttgtgggga ccaggtctgt 4021 gggcctcagg tctggccagc cagggctggt gctgtccccg cctacctcca cttcctttcc 4081 cttgctcact ctggatccag tgacagcagg tgtcatgggt caagcataaa tcatatatag 4141 cattttcagg catgttcctg gtagttcttt tgagtctgac attctaataa aataatttgt 4201 agaaaaaaaa aaaaaaaaaa //