LOCUS BC007541 3560 bp mRNA linear HUM 17-DEC-2007
DEFINITION Homo sapiens ubiquitin associated and SH3 domain containing, B,
mRNA (cDNA clone MGC:15437 IMAGE:2958242), complete cds.
ACCESSION BC007541
VERSION BC007541.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3560)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3560)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52352812.
FEATURES Location/Qualifiers
source 1..3560
/db_xref="H-InvDB:HIT000033287"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15437 IMAGE:2958242"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3560
/gene="UBASH3B"
/gene_synonym="p70"
/gene_synonym="STS-1"
/db_xref="GeneID:84959"
/db_xref="HGNC:HGNC:29884"
/db_xref="MIM:609201"
CDS 315..2264
/gene="UBASH3B"
/gene_synonym="p70"
/gene_synonym="STS-1"
/codon_start=1
/product="ubiquitin associated and SH3 domain containing,
B"
/protein_id="AAH07541.2"
/db_xref="GeneID:84959"
/db_xref="HGNC:HGNC:29884"
/db_xref="MIM:609201"
/translation="MAQYGHPSPLGMAAREELYSKVTPRRNRQQRPGTIKHGSALDVL
LSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQ
KLSDFWQQSKQICGKNKAHNIFPHITLCQFFMCEDSKVDALGEALQTTVSRWKCKFSA
PLPLELYTSSNFIGLFVKEDSAEVLKKFAADFAAEAASKTEVHVEPHKKQLHVTLAYH
FQASHLPTLEKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYTPQNDDELELV
PGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNT
SSSNSLTFGDGVLERRPYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHG
ERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQAR
LVGEALLESNTIIDHVYCSPSLRCVQTAHNILKGLQQENHLKIRVEPGLFEWTKWVAG
STLPAWIPPSELAAANLSVDTTYRPHIPISKLVVSESYDTYISRSFQVTKEIISECKS
KGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGETGIWQL
TDPPILPLTHGPTGGFNWRETLLQE"
BASE COUNT 922 a 900 c 865 g 873 t
ORIGIN
1 gactgctagg cgaggagagg gaagggggcg gaggagacag ggctactgca ggcgcagagc
61 tgggggcagc cgggggcccg agtggctgag gctggtcccg cagcggccgc ttgccggcgt
121 tctggctcct gtggcctcac caggaagcgt cagagtcccg acactgggga agctcggagc
181 gccgcctccg ctgccgccgc ctcctgcctg gctctgggtc cccgagcccc ctcccctggc
241 ccagcccgac tccctcctcc ttcccgaacc atccggctcg ggctccttcc ctggcgatgg
301 ctggccgctg agccatggct cagtacggcc accccagtcc gctcggcatg gctgcgagag
361 aggagctgta cagcaaagtc accccccgga ggaaccgcca acagcgcccc ggcaccatca
421 agcatggatc ggcgctggac gtgctcctct ccatggggtt ccccagagcc cgcgcacaaa
481 aagccttggc atccacggga ggaagaagtg ttcaggcagc atgtgactgg ttattctccc
541 atgtcggtga ccccttcctg gatgaccccc tgccccggga gtacgtcctc tacctccgtc
601 ccaccggccc cttagcacag aagctttccg acttttggca gcagtcgaag cagatctgcg
661 ggaagaacaa ggcacacaac atcttccccc acatcacact ctgccagttc tttatgtgcg
721 aggacagcaa ggtggatgcc ctgggggaag ccctgcagac cacggtcagt cgctggaaat
781 gtaagttctc ggccccgctg cccctggagc tctatacgtc gtccaacttc atcggcctct
841 ttgtaaagga agacagtgcg gaggtcctca agaagtttgc tgctgacttt gctgcagagg
901 ctgcatccaa aaccgaagtg catgtggaac ctcataagaa gcagctacat gtgaccctgg
961 cttaccactt ccaagccagc cacctaccca ccctagagaa actggcccag aacattgacg
1021 tcaagctagg gtgtgactgg gtggctacca tattttctcg ggatatccga tttgctaacc
1081 atgagacatt acaggtcatc tacccctata ccccacaaaa tgacgatgag ctggagctgg
1141 tccccgggga cttcatcttc atgtctccaa tggagcagac cagcaccagc gagggttgga
1201 tctatggcac gtccttaacc accggctgct ctggactcct gcctgagaat tacattacca
1261 aggctgatga atgcagcacc tggatatttc atggttctta ttcaatctta aatacatcgt
1321 catccaactc tctcacgttt ggggatggag tattggagag gcggccttat gaggaccagg
1381 ggctcgggga gacgactcct cttactatca tctgccagcc catgcagccg ctgagggtca
1441 acagccagcc cggcccccag aagcgatgcc tttttgtgtg tcggcatggt gagaggatgg
1501 atgttgtgtt tgggaagtac tggctgtccc agtgcttcga tgccaaaggc cgctacatac
1561 gcaccaacct gaacatgcct catagtttac ctcagcggag tggtggtttc cgagattacg
1621 agaaagatgc tcccatcact gtgtttggat gcatgcaagc aagactagtg ggtgaagcct
1681 tattagagag caataccatt atcgatcatg tctattgctc cccgtccctt cgctgcgttc
1741 agactgcaca caatatcttg aaaggtttac aacaagaaaa tcacttgaag atccgtgtag
1801 agcccggctt atttgagtgg acaaaatggg ttgctgggag cacattacct gcatggatac
1861 ctccatcaga gttagctgca gccaacctga gtgttgatac aacctacaga cctcacattc
1921 caatcagcaa attagttgtt tcagaatcct atgatactta tatcagtaga agtttccaag
1981 taacaaaaga aataataagt gaatgtaaaa gtaaaggaaa taacatcctg attgtggccc
2041 acgcatcttc ccttgaagcg tgtacctgcc aacttcaggg cctgtcacct cagaactcca
2101 aggacttcgt acaaatggtc cgaaagatcc catatctggg attttgttcc tgtgaagaat
2161 taggagaaac tggaatatgg cagctgacag atccaccaat ccttcctctt acccatggac
2221 caactggggg cttcaactgg agagagacct tgcttcaaga ataaaccaca ccagtgaaca
2281 agaaggaaag gccttttgga gtgtgtcttt ctgtgtgttt taaaaacagt gggaaaatcc
2341 acaccacact ctaagtggac agctcagaat aatttagcat atttcctttc acacttaaag
2401 ttcttaagat gagactgtgt aaatgagaga aagacttgat tcagaggaaa aaaatgtgtt
2461 ctctctggac tcttgcctag ctcacaaggc tttggagaat tgtcttccta aatcggggca
2521 cctgctacag aagagaatgt ttcgttccct ctgggtatgc acagctaagg ggcctcattt
2581 ctcccagagg gagctgctgg cccgctctaa ggggtgcaag aggaaggagt gtgcccagac
2641 cagctggggg agcattgaaa ggacagcttg gggatggaat tttttttttt ttatctccat
2701 tttccagtta ggtagagcca agctgaggaa tccttttaag attattagaa aacatgccct
2761 gaagagagtt gttcttaggt tacacatgaa atcctaccgt cactagcccc catacaccag
2821 tgttgctggc tgaagatacc cgcttaagga tgctaacatt taccctggta ctgccacatt
2881 ttctctagag cagctggccc ttcttgctac agccctatcc cccctccttg cttctgtgaa
2941 atggggagac aaagcacttt tgctctccaa agcacttttg gatactcagg aggaaagata
3001 agatacatgt ttgaagtatt caatcatagg agcaaagaac ttgcaaaata tgaagtgact
3061 tggaattaac catgttgtag cctaacgtgc tactgcattt ctaaatcatc aatatttgct
3121 tgtctttgcc cctagactct agactatgtt aactagttaa ggatgttaca ttttgaaagg
3181 atgtatgtta gatatattat ttgcagcaag aagttcattc tgtgcaatat ggacatgttt
3241 gcaaaccata ccaagggtca ggttgttgta cacttacagt acgtgtcaac cataatggaa
3301 catccacaaa tgcatcaatt ataccaggga tgtatagtaa gtcagggaac taatataaat
3361 gatgacagtc atggctgcac tgctacttgt gctgtcgttt tgtttgtttt tctatgataa
3421 tttaaaatac ataggtaggg ctactgagga aatttggaga gccacattct gtggtttctc
3481 attatactta cttcctgcat ttagagggag tttatttaaa agaaataaat gacaatcaaa
3541 ccaaaaaaaa aaaaaaaaaa
//