LOCUS BC007453 3061 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens Smg-5 homolog, nonsense mediated mRNA decay factor (C.
elegans), mRNA (cDNA clone IMAGE:3528110), partial cds.
ACCESSION BC007453
VERSION BC007453.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3061)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3061)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC007453.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: k Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3061
/db_xref="H-InvDB:HIT000033235"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3528110"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3061
/gene="SMG5"
/gene_synonym="EST1B"
/gene_synonym="KIAA1089"
/gene_synonym="LPTS-RP1"
/gene_synonym="LPTSRP1"
/gene_synonym="RP11-54H19.7"
/gene_synonym="SMG-5"
/db_xref="GeneID:23381"
/db_xref="HGNC:HGNC:24644"
CDS <1..1647
/gene="SMG5"
/gene_synonym="EST1B"
/gene_synonym="KIAA1089"
/gene_synonym="LPTS-RP1"
/gene_synonym="LPTSRP1"
/gene_synonym="RP11-54H19.7"
/gene_synonym="SMG-5"
/codon_start=1
/product="SMG5 protein"
/protein_id="AAH07453.2"
/db_xref="GeneID:23381"
/db_xref="HGNC:HGNC:24644"
/translation="GDDSDLSEGFESDSSHDSARASEGSDSGSDKSLEGGGTAFDAET
DSEMNSQESRSDLEDMEEEEGTRSPTLEPPRGRSEAPDSLNGPLGPSEASIASNLQAM
STQMFQTKRCFRLAPTFSNLLLQPTTNPHTSASHRPCVNGDVDKPSEPASEEGSESEG
SESSGRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRL
SVLLNLLPAAGELQESGLALCPEVQDLLEGCELPDLPSSLLLPEDMALRNLPPLRAAH
RRFNFDTDRPLLSTLEESVVRICCIRSFGHFIARLQGSILQFNPEVGIFVSIAQSEQE
SLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPD
TQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNR
YIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGL
PLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG"
BASE COUNT 683 a 880 c 893 g 605 t
ORIGIN
1 ggtgatgaca gtgacctgag tgaaggcttt gaatcggact caagccatga ctcagcccgg
61 gccagtgagg gctcagacag tggctctgac aagagtcttg aaggtggggg aacggccttt
121 gatgctgaaa cagactcgga aatgaatagc caggagtccc gatcagactt ggaagatatg
181 gaggaagagg aggggacacg gtcaccaacc ctggagcccc ctcggggcag atcagaggct
241 cccgattccc tcaatggccc actgggcccc agtgaggcta gcattgccag caatctacaa
301 gccatgtcca cccagatgtt ccagactaag cgctgcttcc gactggcccc cacctttagc
361 aacctgctcc tccagcccac caccaaccct catacctcgg ccagccacag gccttgcgtc
421 aatggggatg tagacaagcc ttcagagcca gcctctgagg agggctctga gtcggagggg
481 agtgagtcca gtggacgctc ctgtcggaat gagcgcagca tccaggagaa gcttcaggtc
541 ctgatggccg aaggtctgct tcctgctgtg aaagtcttcc tggactggct tcggaccaac
601 cccgacctca tcatcgtgtg tgcgcagagc tctcaaagtc tgtggaaccg cctgtctgtg
661 ttgctgaatc tgttgcctgc tgctggtgaa ctccaggagt ctggcctggc cttgtgtcct
721 gaggtccaag atcttcttga aggttgtgaa ctgcctgacc tcccctctag ccttctgctc
781 ccagaggaca tggctcttcg taacctgccc ccgctccgag ctgcccacag acgctttaac
841 tttgacacgg atcggcccct gctcagcacc ttagaggagt cagtggtgcg catctgctgc
901 atccgcagct ttggtcattt catcgcccgc ctgcaaggca gcatcctgca gttcaaccca
961 gaggttggca tcttcgtcag cattgcccag tctgagcagg agagcctgct gcagcaggcc
1021 caggcacagt tccgaatggc acaggaggaa gctcgtcgga acaggctcat gagagacatg
1081 gctcagctac gacttcagct cgaagtgtct cagctggagg gcagcctgca gcagcccaag
1141 gcccagtcag ccatgtctcc ctacctcgtc cctgacaccc aggccctctg ccaccatctc
1201 cctgtcatcc gccaactggc caccagtggc cgcttcattg tcatcatccc aaggacagtg
1261 atcgatggcc tggatttgct gaagaaggaa cacccagggg cccgggatgg gattcggtac
1321 ctggaggcag agtttaaaaa aggaaacagg tacattcgct gccagaaaga ggtgggaaag
1381 agctttgagc ggcataagct gaagaggcag gatgcagatg cctggactct ctataagatc
1441 ctagacagct gcaaacagct gactctggcc cagggggcag gtgaggagga tccgagtggc
1501 atggtgacca tcatcacagg ccttccactg gacaacccca gcgtgctttc aggccccatg
1561 caggcagccc tgcaggccgc tgcccacgcc agtgtggaca tcaagaatgt tctggacttc
1621 tacaagcagt ggaaggaaat tggttgatac tgacccccag gccctgcagt ggggctgact
1681 ccagatctct cctgccctcc ctggcagcca ggaccagcac ctgtagtcac cccaccacac
1741 gcagactcat gcacgcacac aggagggagg cctagctgct cagaggctgc agggagggcc
1801 caggagccgg ctgggagggt ggggtccctt tgttgccaag acgttaggaa agcgaggaaa
1861 gtgcttggat taggagagtc ttgtgggccc ctggccagcc ttcctgcctc agctcccctg
1921 ctgtctccag gggcaggtgg taggcatggg tacctgcatt tcactggaat gggttcttgg
1981 atctctgagg ggaaggaaca gcaaaagagg cccttcttcc tcacccaaga tgcagggtgg
2041 ttggggccag gagttggacc ctctaggtct tgggggaaga gctgggtaat acctggtgtc
2101 tgagtgattc tctgcagacc cttcccctcc tcaaggatca cccatcctcc tttcagcccc
2161 ctttatgggg accaggcagc tctggagcca gccacagggg ctgttagaga agcaaggcct
2221 ggagtggcct gcaccgagta gcagggtcag ggttcgtgtg ctcctcctcc tgctgcaggg
2281 gctgcacatc ccattgcccc acttctgctt tgtgtctccc tctgtctagc ttccagggca
2341 gggagcaggc cccacctagg gctgcaggca gtctggcctg tgccagcacg gtctcctgtg
2401 cccaccagcc ccacaggtgc tgtgctttgt gctcttggct gctgtgctgg gacagaatgg
2461 gatgccagga agagaagaaa gggggtgcag tctgaggcca ccacccccct tcctatctaa
2521 gggagggctg aagacaaggg gccggcattc agtgggcagc agaaaggaga ggctccttga
2581 agctgctcag tcagaggccc ccgtccctcc ttttgccttc cgcaggactg aagacctgaa
2641 ggggctggct tttggagtgt tgaggtgaat atctgggagc agagatcatg aatagctcag
2701 ggcagtgaat ggcgcaccaa gagcagggct gtgtgtggga ggctgcagcc aggattgcct
2761 cagctcctcc ccctcaggct gggaggatag cacaggctag gggctcgggg tggagggtct
2821 cagctctgct gcccccaccc cagtactagc ctagcttccc aagctgtggc ttagaggata
2881 gttggcttcc tgcctctctc ctctaaaata gcaagtctgg gaaatcctgg ggtgagtgga
2941 gtcaccccac tcccagttgc tggcagagac tgagactaaa gcatcactta ataaaccccc
3001 caagcccaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3061 a
//