LOCUS BC007424 2200 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PRP4 pre-mRNA processing factor 4 homolog (yeast),
mRNA (cDNA clone MGC:3611 IMAGE:3029831), complete cds.
ACCESSION BC007424
VERSION BC007424.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2200)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2200)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007424.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: j Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222192.
FEATURES Location/Qualifiers
source 1..2200
/db_xref="H-InvDB:HIT000033211"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3611 IMAGE:3029831"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2200
/gene="PRPF4"
/gene_synonym="HPRP4"
/gene_synonym="HPRP4P"
/gene_synonym="PRP4"
/gene_synonym="Prp4p"
/db_xref="GeneID:9128"
/db_xref="HGNC:HGNC:17349"
/db_xref="MIM:607795"
CDS 64..1629
/gene="PRPF4"
/gene_synonym="HPRP4"
/gene_synonym="HPRP4P"
/gene_synonym="PRP4"
/gene_synonym="Prp4p"
/codon_start=1
/product="PRP4 pre-mRNA processing factor 4 homolog
(yeast)"
/protein_id="AAH07424.1"
/db_xref="GeneID:9128"
/db_xref="HGNC:HGNC:17349"
/db_xref="MIM:607795"
/translation="MASSRASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAK
GESGILGKDGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVST
DDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEE
YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLR
SLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG
AIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSG
RFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWD
LRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL
VTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIAT
CSYDRTFKLWMAE"
BASE COUNT 575 a 500 c 592 g 533 t
ORIGIN
1 cggtggacgg tctgaaaggg agtgttcggg tttcgctggg gcctcgcggc tccagagccc
61 agcatggctt cctcgcgagc ctcttccacg gcaaccaaaa ctaaagcacc cgacgactta
121 gttgctccgg tcgtgaagaa accacacatc tattatggaa gtttggaaga gaaggagagg
181 gagcgtctgg ccaaaggaga gtctgggatt ttggggaaag acggacttaa agcagggatc
241 gaagctggaa atattaatat aacctctgga gaagtgtttg aaattgaaga gcatatcagc
301 gagcgacagg cagaagtatt ggctgagttt gagagaagga agcgagcccg gcagatcaat
361 gtttccacag atgactcaga ggtcaaagct tgccttagag ccttggggga acccatcaca
421 ctttttggag agggtcctgc tgaaagaaga gaaaggttaa gaaatatcct ctcagttgtc
481 ggtactgatg ccttgaaaaa gaccaaaaag gatgatgaga agtctaaaaa gtccaaagaa
541 gagtatcagc aaacctggta tcatgaagga ccaaatagct tgaaggtggc aagactatgg
601 attgctaatt attcgttgcc cagggcaatg aaacgcttgg aagaggcccg actccataag
661 gagattcctg agacaacaag gacctcccag atgcaagagc tgcacaagtc tctccggtct
721 ttgaataatt tttgcagtca gattggggat gatcggccta tctcctactg tcactttagt
781 cccaattcca agatgctggc cacagcttgt tggagtgggc tttgcaagct ctggtctgtt
841 cctgattgca acctccttca cactcttcga gggcataaca caaatgtagg agcaattgta
901 ttccatccca aatccactgt ctccttggac ccaaaagatg tcaacctggc ctcttgtgcg
961 gctgatggct ctgtgaagct ttggagtctc gacagtgatg aaccagtggc agatattgaa
1021 ggccatacag tgcgtgtggc gcgggtaatg tggcatcctt caggacgttt cctgggcacc
1081 acctgctatg accgttcatg gcgcttatgg gatttggagg ctcaagagga gatcctgcat
1141 caggaaggcc atagcatggg tgtgtatgac attgccttcc atcaagatgg ctctttggct
1201 ggcactgggg gactggatgc atttggtcga gtttgggacc tacgcacagg acgttgtatc
1261 atgttcttag aaggccacct gaaagaaatc tatggaataa atttctcccc caatggctat
1321 cacattgcaa ccggcagtgg tgacaacacc tgcaaagtgt gggacctccg acagcggcgt
1381 tgcgtctaca ccatccctgc tcatcagaac ttagtgactg gtgtcaagtt tgagcctatc
1441 catgggaact tcttgcttac tggtgcctat gataacacag ccaagatctg gacgcaccca
1501 ggctggtccc cgctgaagac tctggctggc cacgaaggca aagtgatggg cctagatatt
1561 tcttccgatg ggcagctcat agccacttgc tcatatgaca ggaccttcaa gctgtggatg
1621 gctgaataga tgacaatggg aaaaggactt gaacctcaag ctctctctaa ggagctgttt
1681 tcctcaaacg agaagaattg aagtgtttag ttctatcatg ttttctgcca attaccatgc
1741 atagaccctc agtagaattg gatttccatg tcagccccca ctccaggaag gcagcccaat
1801 ccctaggtga tggggaaccc ctctcacggt tgaaaattta ttaccttttt acgccctgcc
1861 acgaactgtg tagacattgt ttttattaat cttttgtttg gccgggcgtg gtggctcacg
1921 cctgtaatcc tagcactttg ggaggccgag gtgggtagat cgcttgagct caggagttca
1981 agacgagcct gggcaacatg gcaaatgccg tctctgcaaa aaaatactaa aattagctgg
2041 tcgcggtggc ttctgcctgt gattccggct acttgggagg ctgaggtggg agggattgct
2101 taagcctggg aggcagaggt tgcagtgagc cgagattgcg ccattgcact ctagcctgtg
2161 tgacagagca agaccctgtc tcaaaaaaaa aaaaaaaaaa
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