LOCUS BC007390 1299 bp mRNA linear HUM 16-SEP-2003 DEFINITION Homo sapiens tripartite motif-containing 28, mRNA (cDNA clone IMAGE:3831930), partial cds. ACCESSION BC007390 VERSION BC007390.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1299) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1299) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC007390.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 24 Row: f Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1299 /db_xref="H-InvDB:HIT000086816" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3831930" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1299 /gene="TRIM28" /gene_synonym="KAP1" /gene_synonym="RNF96" /gene_synonym="TF1B" /gene_synonym="TIF1B" /db_xref="GeneID:10155" /db_xref="MIM:601742" CDS <1..1114 /gene="TRIM28" /gene_synonym="KAP1" /gene_synonym="RNF96" /gene_synonym="TF1B" /gene_synonym="TIF1B" /codon_start=2 /product="TRIM28 protein" /protein_id="AAH07390.2" /db_xref="GeneID:10155" /db_xref="MIM:601742" /translation="SGVKRSRSGEGEVSGLMRKVPRVSLERLDLDLTADSQPPVFKVF PGSTTEDYNLIVIERGAAAAATGQPGTAPAGTPGAPPLAGMAIVKEEETEAAIGAPPT ATEGPETKPVLMALAEGPGAEGPRLASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSA TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLS LDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLT LIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEA FGDTKFSAVLVEPPPMSLPGAGLSSQELSGGPGDGP" misc_feature 485..619 /gene="TRIM28" /gene_synonym="KAP1" /gene_synonym="RNF96" /gene_synonym="TF1B" /gene_synonym="TIF1B" /note="PHD; Region: PHD-finger. PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains" /db_xref="CDD:pfam00628" misc_feature 695..1009 /gene="TRIM28" /gene_synonym="KAP1" /gene_synonym="RNF96" /gene_synonym="TF1B" /gene_synonym="TIF1B" /note="BROMO; Region: bromo domain" /db_xref="CDD:smart00297" BASE COUNT 249 a 414 c 372 g 264 t ORIGIN 1 gtcaggtgtg aaacggtccc gctcaggtga gggcgaggtg agcggcctta tgcgcaaggt 61 gccacgagtg agccttgaac gcctggacct ggacctcaca gctgacagcc agccacccgt 121 cttcaaggtc ttcccaggca gtaccactga ggactacaac cttattgtta ttgaacgtgg 181 cgctgccgct gcagctaccg gccagccagg gactgcgcct gcaggaaccc ctggtgcccc 241 acccctggct ggcatggcca ttgtcaagga ggaggagacg gaggctgcca ttggagcccc 301 tcctactgcc actgagggcc ctgagaccaa acctgtgctt atggctcttg cggagggtcc 361 tggtgctgag ggtccccgcc tggcctcacc tagtggcagc accagctcag ggctggaggt 421 ggtggctcct gagggtacct cagccccagg tggtggcccg ggaaccctgg atgacagtgc 481 caccatttgc cgtgtctgcc agaagccagg cgatctggtt atgtgcaacc agtgtgagtt 541 ttgtttccac ctggactgtc acctgccggc cctgcaggat gtaccagggg aggagtggag 601 ctgctcactc tgccatgtgc tccctgacct gaaggaggag gatggcagcc tcagcctgga 661 tggtgcagac agcactggcg tggtggccaa gctctcacca gccaaccagc ggaaatgtga 721 gcgtgtactg ctggccctat tctgtcacga accctgccgc cccctgcatc agctggctac 781 cgactccacc ttctccctgg accagcccgg tggcaccctg gatctgaccc tgatccgtgc 841 ccgcctccag gagaagttgt cacctcccta cagctcccca caggagtttg cccaggatgt 901 gggccgcatg ttcaagcaat tcaacaagtt aactgaggac aaggcagacg tgcagtccat 961 catcggcctg cagcgcttct tcgagacgcg catgaacgag gccttcggtg acaccaagtt 1021 ctctgctgtg ctggtggagc ccccgccgat gagcctgcct ggtgctggcc tgagttccca 1081 ggagctgtct ggtggccctg gtgatggccc ctgaggctgg agcccccatg gccagcccag 1141 cctggctctg ttctctgtcc tgtcacccca tccccactcc cctggtggcc tgactcccac 1201 tccctggtgg ccccatcccc cagttcctca cgatatggtt tttacttctg tggatttaat 1261 aaaaacttca ccagttaaaa aaaaaaaaaa aaaaaaaaa //