LOCUS BC007300 2559 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens SNHG3-RCC1 readthrough transcript, mRNA (cDNA clone MGC:15698 IMAGE:3351770), complete cds. ACCESSION BC007300 VERSION BC007300.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2559) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2559) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 22 Row: o Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20149512. FEATURES Location/Qualifiers source 1..2559 /db_xref="H-InvDB:HIT000033130" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:15698 IMAGE:3351770" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2559 /gene="SNHG3-RCC1" /db_xref="GeneID:751867" /db_xref="HGNC:HGNC:33536" CDS 287..1552 /gene="SNHG3-RCC1" /codon_start=1 /product="SNHG3-RCC1 readthrough transcript" /protein_id="AAH07300.1" /db_xref="GeneID:751867" /db_xref="HGNC:HGNC:33536" /translation="MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGD VGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD TSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM GKQLENRVVLSVSSGGQHTVLLVKDKEQS" BASE COUNT 659 a 598 c 734 g 568 t ORIGIN 1 agattcgcag tggtcgcttc ttctccttgg atttgttaag gattccaagt aactcttatt 61 tggagagaag acgatctgca cttcgcattt tggcattgac atttaatttt agggtccttt 121 atatagaagg gagactacat gaatgtgtaa gatcttggag gaagacagca gagagagaga 181 gagagagcag agatcccagg gttaaaagtt ggagaaattt cacagtacat catccaaaag 241 aggagtccat gatggaggca gaggtaaact tggagaggac aggaagatgt cacccaagcg 301 catagctaaa agaaggtccc ccccagcaga tgccatcccc aaaagcaaga aggtgaaggt 361 ctcacacagg tcccacagca cagaacccgg cttggtgctg acactaggcc agggcgacgt 421 gggccagctg gggctgggtg agaatgtgat ggagaggaag aagccggccc tggtatccat 481 tccggaggat gttgtgcagg ctgaggctgg gggcatgcac accgtgtgtc taagcaaaag 541 tggccaggtc tattccttcg gctgcaatga tgagggtgcc ctgggaaggg acacatcagt 601 ggagggctcg gagatggtcc ctgggaaagt ggagctgcaa gagaaggtgg tacaggtgtc 661 agcaggagac agtcacacag cagccctcac cgatgatggc cgtgtcttcc tctggggctc 721 cttccgggac aataacggtg tgattggact gttggagccc atgaagaaga gcatggtgcc 781 tgtgcaggtg cagctggatg tgcctgtggt aaaggtggcc tcaggaaacg accacttggt 841 gatgctgaca gctgatggtg acctctacac cttgggctgc ggggaacagg gccagctagg 901 ccgtgtgcct gagttatttg ccaaccgtgg tggccggcaa ggcctcgaac gactcctggt 961 ccccaagtgt gtgatgctga aatccagggg aagccggggc cacgtgagat tccaggatgc 1021 cttttgtggt gcctatttca cctttgccat ctcccatgag ggccacgtgt acggcttcgg 1081 cctctccaac taccatcagc ttggaactcc gggcacagaa tcttgcttca taccccagaa 1141 cctaacatcc ttcaagaatt ccaccaagtc ctgggtgggc ttctctggtg gccagcacca 1201 tacagtctgc atggattcgg aaggaaaagc atacagcctg ggccgggctg agtatgggcg 1261 gctgggcctt ggagagggtg ctgaggagaa gagcataccc accctcatct ccaggctgcc 1321 tgctgtctcc tcggtggctt gtggggcctc tgtggggtat gctgtgacca aggatggtcg 1381 tgttttcgcc tggggcatgg gcaccaacta ccagctgggc acagggcagg atgaggacgc 1441 ctggagccct gtggagatga tgggcaaaca gctggagaac cgtgtggtct tatctgtgtc 1501 cagcgggggc cagcatacag tcttattagt caaggacaaa gaacagagct gatgaagcct 1561 ctgagggcct ggcttctgtc ctgcacaacc tccctcacag aacagggaag cagtgacagc 1621 tgcagatggc agcgggcctc tccccagccc tgagcactgt gtcagttcct gccttttctc 1681 atcagcagaa cagaatcctt ttcctctttt ccttcctcct ctttggaatt ttcctgggac 1741 ctacagaata aaggggggga tggacagggg gttttcaaaa ggaacatggc tcactcagag 1801 ctatatggtt agacgtttct ccccttttcc ctaccttcca tggtcctggt tggccctggc 1861 tttgcctact agaaaaccaa aacttccccc ctggggtttt gtgcccactc tctgagaagt 1921 tggggctcca tcaagcccca ttctagtcat gtgccccttt cctgtcccta acagtccaca 1981 ggcaaacaaa tggtacagtc ataagagcca tctgtcacgg acccacgccc agaggaacgt 2041 gcagaaaaaa gcagagctac atggctgtgg gcaactataa gccaaatatt tggctcagaa 2101 caggtgtcca tgggacaaaa aagaacgatc ctccacttga ccaagaaaaa agtgattctc 2161 ccagaagcac aaagcatact cttgcccctc aggtgttgct tgtgtacatc gtacccatcc 2221 attcggcttc acctgcagcc aacggcctgg aatcgcaaag agacaccact ctgggcagag 2281 cagagcaggg tatggggtgg ggagagaggg tggagggttt tataaacaaa cttaacagca 2341 atattgaaag gaggtggggg attgagggag ggacagagtg ttggagggcc agagactagt 2401 cctgagatgg aaacagcaac ttgtacagtg gctgagaaaa taggatatag ttttgatttt 2461 tttaattgta aaatattttg gagggagaac aaaatctttt aacattttga ataaatttag 2521 agttttataa aatagaaaaa aaaaaaaaaa aaaaaaaaa //