LOCUS BC007291 2938 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens shroom family member 3, mRNA (cDNA clone
IMAGE:3349317), partial cds.
ACCESSION BC007291
VERSION BC007291.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: m Column: 15.
FEATURES Location/Qualifiers
source 1..2938
/db_xref="H-InvDB:HIT000086784"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3349317"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2938
/gene="SHROOM3"
/gene_synonym="APXL3"
/gene_synonym="KIAA1481"
/gene_synonym="MSTP013"
/gene_synonym="SHRM"
/gene_synonym="ShrmL"
/db_xref="GeneID:57619"
/db_xref="HGNC:HGNC:30422"
/db_xref="MIM:604570"
CDS <1..2305
/gene="SHROOM3"
/gene_synonym="APXL3"
/gene_synonym="KIAA1481"
/gene_synonym="MSTP013"
/gene_synonym="SHRM"
/gene_synonym="ShrmL"
/codon_start=2
/product="SHROOM3 protein"
/protein_id="AAH07291.1"
/db_xref="GeneID:57619"
/db_xref="HGNC:HGNC:30422"
/db_xref="MIM:604570"
/translation="DVLAGPVHVRSRSSPATADKRQDVLLGQDSGFGLVKDPCYLAGP
GSRSLSCSERGQEEMLPLFHHLTPRWGGSGCKAIGDSSVPSECPGTLDHQRQASRTPC
PRPPLAGTQGLVTDTRAAPLTPIGTPLPSAIPSGYCSQDGQTGRQPLPPYTPAMMHRS
NGHTLTQPPGPRGCEGDGPEHGVEEGTRKRVSLPQWPPPSRAKWAHAAREDSLPEESS
APDFANLKHYQKQQSLPSLCSTSDPDTPLGAPSTPGRISLRISESVLRDSPPPHEDYE
DEVFVRDPHPKATSSPTFEPLPPPPPPPPSQETPVYSMDDFPPPPPHTVCEAQLDSED
PEGPRPSFNKLSKVTIARERHMPGAAHVVGSQTLASRLQTSIKGSEAESTPPSFMSVH
AQLAGSLGGQPAPIQTQSLSHDPVSGTQGLEKKVSPDPQKSSEDIRTEALAKEIVHQD
KSLADILDPDSRLKTTMDLMEGLFPRDVNLLKENSVKRKAIQRTVSSSGCEGKRNEDK
EAVSMLVNCPAYYSVSAPKAELLNKIKEMPAEVNEEEEQADVNEKKAELIGSLTHKLE
TLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSG
RLARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVLGILAN
YLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLESLPSDFIPKAGALAL
PPNLTSEPIPAGGCTFSGIFPTLTSPL"
BASE COUNT 779 a 760 c 739 g 660 t
ORIGIN
1 ggacgtcctt gcgggccctg tccatgtgag gtccaggtca tctcccgcca ccgcagacaa
61 gcgccaggat gtgcttttgg ggcaagacag tggctttggt cttgtgaagg atccatgtta
121 tttggctggt cctggatcta ggtcactcag ttgttcagaa agaggccaag aagagatgct
181 gccgctcttc caccatctca cccctcgttg gggtggttca ggctgcaaag ccattggtga
241 ttcctccgtt cctagtgaat gtcctggaac cctggaccat cagaggcaag ccagtaggac
301 accctgcccc aggccaccac tggcaggaac gcaagggctg gtcacagaca ccagggctgc
361 acccctgacc ccaattggca cccctctgcc ttcagccatt ccctctggct actgctcaca
421 ggacggtcag acagggcgac agcctctccc gccctacacc cctgccatga tgcacagaag
481 caatggtcac accctgaccc agcctcccgg tccaagaggc tgtgagggcg atggcccaga
541 gcatggggta gaagagggaa cgaggaagag ggtctcgctg cctcagtggc cacctccttc
601 tcgagcaaag tgggcccacg cagccagaga ggacagcctt cctgaggaat cctcagcccc
661 tgattttgca aacctgaagc actatcaaaa acagcagagt cttccaagtt tatgcagcac
721 ttctgaccca gacacacctc ttggggcccc gagcactcca gggaggatct ccctccgaat
781 atctgagtct gtcctgcggg actccccgcc acctcatgag gattatgaag acgaagtgtt
841 tgtgagggat ccgcacccca aggccacgtc cagccccaca tttgaacctc ttcccccacc
901 cccacctcct ccaccgagtc aggaaacccc ggtgtatagc atggatgact tccctccacc
961 tcctccccac actgtatgtg aggcgcagct ggacagtgag gatcccgagg ggccacgccc
1021 cagcttcaac aaactttcta aagtgacaat tgcaagggaa aggcacatgc ctggtgcagc
1081 ccatgtggta ggtagtcaga cactggcttc cagactccaa acttctatca agggttcaga
1141 ggctgagtcc acaccaccct ccttcatgag cgttcacgcc caacttgctg ggtctcttgg
1201 tgggcagcca gcacccatcc agactcaaag cctcagccat gatccagtca gtggaactca
1261 gggtttagaa aagaaagtca gtcctgatcc tcagaagagt tcagaagaca tcagaacaga
1321 ggctttggcc aaggaaattg tccaccaaga caaatctcta gcagacattt tggatccaga
1381 ctccaggctg aagacaacaa tggacctgat ggaaggtttg tttccccgag atgtgaactt
1441 gctgaaggaa aacagtgtaa agaggaaggc catacagaga actgtcagct cttcaggatg
1501 tgaaggcaag aggaatgaag acaaggaagc agtgagcatg ttggttaact gccctgccta
1561 ctacagtgtg tctgctccca aggctgagct actgaacaaa atcaaagaga tgccagcaga
1621 agtgaatgag gaagaggaac aggcagatgt caatgaaaag aaggctgagc tcattggaag
1681 tctcacccac aagctggaga ccctccagga ggcgaagggg agcctgctca cggacatcaa
1741 gctcaacaac gccctgggag aagaggtgga ggctctgatc agcgagctct gcaagcccaa
1801 tgagtttgac aagtatagga tgttcatagg ggatttggac aaggtggtca acctgctgct
1861 ctccctctcg gggcgtctag cccgtgttga gaatgtcctt agcggccttg gtgaagatgc
1921 cagtaatgaa gaaaggagct ctctttacga gaaaaggaag atcctggctg gtcagcatga
1981 ggatgcccgg gagctgaagg agaacctgga tcgcagggag cgagtagtgc tgggcatctt
2041 ggccaattac ctttcagagg agcagctcca ggactaccag cacttcgtga aaatgaagtc
2101 cacgctcctc attgagcaac ggaagctgga tgacaagatc aagctgggcc aggagcaggt
2161 caagtgtctg ctggagagcc tgccctcaga tttcattccc aaggctgggg ccctggctct
2221 gcccccaaac ctcacgagtg agcccattcc tgctgggggc tgtactttca gtggtatttt
2281 cccaacatta acctctccac tttaacctct tctaaaatac ccaaccaaaa gatcactgtt
2341 tctctcaaca ctatttaatc tgaaaaatgt ttcagtacaa accactgttt gaactatctg
2401 ggttattggt gtttgttcct gatgaaagga aaaaaattct ctccaggagg aagccttttt
2461 ccttcttgcc cttcctgatt gatcttctga gagctcgaat gctgctggac acgtacccct
2521 ttctattatt actttgtagt agaaagaaag ttaatgaaac tgagaactga ttggagggtg
2581 tttgatcatt tagtttttaa caggctgagg caacatggat cagtgtgtgt ccccctcagg
2641 aatgtatcca cagtggcctt ccttgctggt gggcagtgta tcctgatggc agggtacaag
2701 taccattaat gaagggtctg caacataaag ccttaaaaag acacacacta agaaaactgt
2761 aaaaccttga acattgttat ttatattttt taaaatggaa aagatcacta tgtttgttgt
2821 gctaaccact tatttgattc tgttttgtgg tggacataga tgattacgtt tgagctttgt
2881 attttgtgaa aaccttaatg aaatgaattc caaagataaa aaaaaaaaaa aaaaaaaa
//