LOCUS BC007284 2066 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens retina and anterior neural fold homeobox 2, mRNA (cDNA
clone MGC:15631 IMAGE:3344166), complete cds.
ACCESSION BC007284
VERSION BC007284.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2066)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2066)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127653
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2066
/db_xref="H-InvDB:HIT000033119"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15631 IMAGE:3344166"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2066
/gene="RAX2"
/gene_synonym="ARMD6"
/gene_synonym="CORD11"
/gene_synonym="QRX"
/db_xref="GeneID:84839"
/db_xref="HGNC:HGNC:18286"
/db_xref="MIM:610362"
CDS 326..880
/gene="RAX2"
/gene_synonym="ARMD6"
/gene_synonym="CORD11"
/gene_synonym="QRX"
/codon_start=1
/product="RAX2 protein"
/protein_id="AAH07284.1"
/db_xref="GeneID:84839"
/db_xref="HGNC:HGNC:18286"
/db_xref="MIM:610362"
/translation="MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLER
AFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPE
APALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFA
LEEASLRLLAKEHAQALDRAWPPA"
BASE COUNT 418 a 693 c 657 g 298 t
ORIGIN
1 gccaggcccg ctggggcagg tgtcccgtgg aaatcgacgg aggggctgcc gtgggcggcc
61 gtgacagtca cagagagggg aagagaaaac agggacggtg acacacacag agagaaggaa
121 gagcagacag aggcacagca ggagaccccc ccaagcccga ggaggacagc ctggggatgc
181 agagcacatg ccggccccag tggagggaac cgatttcccc ggagccggga ggcaagcctg
241 gggctcccct gccctgtccc tgccggtagc ccccccagcc gtctccccac catctgtccc
301 gctgccgtcc caccaggtgg gagccatgtt cctgagcccg ggcgaggggc cggcaaccga
361 gggtgggggt ctggggccgg gcgaggaggc ccccaagaag aagcaccgga ggaaccgcac
421 caccttcacc acctaccagc tgcaccagct ggagcgggcg ttcgaggcct ctcactaccc
481 ggatgtgtac agccgtgagg agctggcagc caaggtgcac ctacctgagg tgcgcgtgca
541 ggtgtggttc cagaaccgcc gggccaagtg gcgccgccag gagcggctgg agtcaggctc
601 gggtgccgtg gcagctccga gactccccga ggccccagcg ctgccgttcg cccgcccccc
661 ggccatgtcg ctgcccctgg agccctggtt gggccccgga ccgccggccg tgccaggcct
721 cccccgcctc ctgggcccgg gcccggggct gcaagcgtcc ttcgggcctc atgcctttgc
781 tcccaccttc gcagatggct tcgccctgga ggaggcgtcc ctgcggctgc tggccaagga
841 acatgcacag gctctggaca gggcctggcc gccagcctga gcctgccgcc ctcccgggcc
901 ccctcctcgg cccaacccga gaaccgggga cgtgccctgg tgacagccac cacgccttgg
961 cctaggccga ggtcatggag caaccgtggt caggccaggc caccaccact ggggagcggg
1021 accagagaga caggctgctg ggttccctgc ccccatcccg tctcccaccc catcgccacc
1081 ctgtcagccc attctataga gagggaaacc ggggcttagg caggaagcca ggtccccaaa
1141 gtcgcacggc caggagtgga tggagctgcc tttcagaccc atcaccggtc ctaccgtccg
1201 gggcacagcg acaggttctg gagagagggt gggtcccggg ccaggtgctg gtgggcctcc
1261 aggtggaggc gggctgatgc tgggtgtgtc gtcatcgtca gaccgttcct cacgtcccca
1321 cagaccccag gccctgtgca tgtccccagt ggaggcatgg ccagcatctg ctctgtccaa
1381 cccagtcgca tcgcccaaga gctctgagca aggaggctgt cgcggggccg agaacccgct
1441 gggactggca agcacggctg gcccagtgca gcaggagggg gccctgaggc atgggatggg
1501 acagtctggg ccagcgccac ctcccgggac agaagtgcgg caccagggca ggagctgcag
1561 tagctaccct ccccgtctcc agcctgggct ccccagatca ctcccagatc accaggtcac
1621 cccatctcta ggcggcacct cacacaccag tcctgtggtc caacgccccg ccatcaccca
1681 atgtcaccgc acaccaggca gtggggacac ggcagtaagc acaagaaaga tttttttttt
1741 taaagctaaa ccaggccagg tgcggtggct catgcctgta atcccagtgc tttgggaggc
1801 tgaggtggga ggattgcttg agaccagcct gggtgacaca gcaagacccc atctccacaa
1861 acgtttttaa aatgtgccgg gtgtactggt gcacacctgt catcccagct acccaagaag
1921 ctgaggcaag aggatcactt gagcccagaa ggtcgaggct gcagggagct gtgatcacac
1981 tgctgcactc cagcctgtgc aacagagcca gaccctgact caatacaaat aaaaaacaaa
2041 tctaaaacaa aaaaaaaaaa aaaaaa
//