LOCUS BC007224 2832 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 10 (GalNAc-T10), mRNA (cDNA clone
IMAGE:3347333), partial cds.
ACCESSION BC007224
VERSION BC007224.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2832)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2832)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: m Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38788170.
FEATURES Location/Qualifiers
source 1..2832
/db_xref="H-InvDB:HIT000033082"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3347333"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2832
/gene="GALNT10"
/gene_synonym="DKFZp586H0623"
/gene_synonym="FLJ00205"
/gene_synonym="FLJ11715"
/gene_synonym="GalNAcT10"
/gene_synonym="pp-GalNAc-T10"
/db_xref="GeneID:55568"
/db_xref="MIM:608043"
CDS <1..744
/gene="GALNT10"
/gene_synonym="DKFZp586H0623"
/gene_synonym="FLJ00205"
/gene_synonym="FLJ11715"
/gene_synonym="GalNAcT10"
/gene_synonym="pp-GalNAc-T10"
/codon_start=1
/product="GALNT10 protein"
/protein_id="AAH07224.2"
/db_xref="GeneID:55568"
/db_xref="MIM:608043"
/translation="GGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDE
YAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAA
AWGEIRNVGTGLCADTKHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDP
QHTKKFCFDAISHTSPVTLYDCHSMKGNQLWKYRKDKTLYHPVSGSCMDCSESDHRIF
MNTCNPSSLTQQWLFEHTNSTVLEKFNRN"
BASE COUNT 749 a 735 c 709 g 639 t
ORIGIN
1 gggggccgca tggaggacat cccctgctcc agggtgggcc atatctacag gaagtatgtg
61 ccctacaagg tcccggccgg agtcagcctg gcccggaacc ttaagcgggt ggccgaagtg
121 tggatggatg agtacgcaga gtacatttac cagcgccggc ctgaataccg ccacctctcc
181 gctggggatg tcgcagtcca gaaaaagctc cgcagctccc ttaactgcaa gagtttcaag
241 tggtttatga cgaagatagc ctgggacctg cccaaattct acccacccgt ggagcccccg
301 gctgcagctt ggggggagat ccgaaatgtg ggcacagggc tgtgtgcaga cacaaagcac
361 ggggccttgg gctccccact aaggctagag ggctgcgtcc gaggccgtgg ggaggctgcc
421 tggaacaaca tgcaggtatt caccttcacc tggagagagg acatccggcc tggagacccc
481 cagcacacca agaagttctg ctttgatgcc atttcccaca ccagccctgt cacgctgtac
541 gactgccaca gcatgaaggg caaccagctg tggaaatacc gcaaagacaa gaccctgtac
601 caccctgtca gtggcagctg catggactgc agtgaaagtg accataggat cttcatgaac
661 acctgcaacc catcctctct cacccagcag tggctgtttg aacacaccaa ctcaacagtc
721 ttggaaaaat tcaataggaa ctgagccctc atgtcccctt ggcaggcccc ccagggtctg
781 gcactcactg cagacttcct ctttcaaggg aggcagggcc cctgtgggca ctaggtgtaa
841 aaggtgctgg ccaaatggtt cagggtgaag agggctcttg attcaggggc tggggtctgc
901 ctggtccttg agcccctgag ttgtgggggt agggtgaaga gcatatccca caagaggccc
961 cacagggagc agagactgct ttaatccctg ctgacatcac ggaaaagcaa cagagccttt
1021 tcaactttgt cactatgtcc ccttgaacat tatgtgggag aacaccaagg tagcctaggc
1081 cacccaaaag tgagtcctgc gaggttgccc agccctcaga tggctctcct acatgatggt
1141 gctttagaaa caaaggtaaa atttgcctgt ttggggcagc ttttagtatc gatgccactc
1201 atctgcagca gaagagaaag aagtcctctt ggggcttttt agtttctgcc gtcctggggg
1261 gaacattgca gttactgcac agcttctgtt ctctgtcaca accccaggtg atttggtcgg
1321 gtcaaaggcc atacttgggg ccctaagagt gttcagtatt gaatgctgat cagctgccag
1381 gtgaggagtc agaagaggga gcccccccta gacatttctt tgcagctatg gacatgcggg
1441 atatctcccc ctgctctctg ggtatttgaa atgtcaattt tagcactctc caggcacaag
1501 gacagcccag caccagcttt acagggcagt gtttcagatg gccctgagcc cacggaaaag
1561 gccaggtaga cctccaaact agaaatgctg gctgatttgc cctgatccat gcttccattt
1621 ccctgtctct cttccccagg caattactgg cctcaaaaga ggaacagagg tgctgcgagg
1681 tgctcacctc acagagtctg gaggcctcca ggatcaactg tgggcaaagt gcctgcctct
1741 gacctcatca tggttctagt tctcatacag aactccagaa tttttaaaga actctataat
1801 tggattgcaa actaggatgc tacataggat tctggtattc cacatccaat atggatttct
1861 agaatgctgt gattaaagga gccagccagg tgtaatacag tcaaggcagc ccccagccta
1921 gagacaatct gtgaaatcca aagttggtgg tgttgggaaa gcagggggac atgtgtccct
1981 cagctcagca gaggctgtgg tacaacatgg tccttggtga agacctgcac ccctggaacc
2041 tcccaccatc atcacaactg tagtctcatt tgcagtggag aaaagaaccc gacgtcccac
2101 agccagatat acacccagct ccatgccagc ccttcatgtt taccttttgc tttgttaatt
2161 acatgtcaga ctcctagagg gcctccagac taataggaag catttctgta accaacctgc
2221 cacccactga ttcagaaatg gaaatcacat tccacaatct atggcttcta ccagctagcc
2281 caggaaatac ttgaaatcag cattccaatt agtgttgagt ctcttgattg tgtcatttac
2341 caattaaata actgagacct aagtctggga acagagccac gaatctgcct ttgagatgct
2401 ggcagatctc aaggccatca attattgggg gagggaggga caaacactcc caatcatcca
2461 ccagtcagac tgaatgtgta gctggcgagg aattacttcc acttctggcc cagcacaagc
2521 cctgctttgg ccacctgtct gcaagagagg cggcccctgt gcttgcaacg cttacgtgtt
2581 gatcccagtg tccttttcca aatgagtgct gtagctttag aagtggccct ctatagaaag
2641 aagtcaaaag atgaggcccc ttctagaatc taggataaca agagtgttga cagtttgagg
2701 agtcgaattg agattcatca tcaaagagca atgcagcgtc gttaaaataa aaactgtgcc
2761 ttttaaaaag aaaaatgcaa atatagagca aatccctaaa cttgaaaaaa aaaaaaaaaa
2821 aaaaaaaaaa aa
//