LOCUS BC007082 1454 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily e, member 1, mRNA (cDNA clone
MGC:14622 IMAGE:4076036), complete cds.
ACCESSION BC007082
VERSION BC007082.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1454)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1454)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: c Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45827732.
FEATURES Location/Qualifiers
source 1..1454
/db_xref="H-InvDB:HIT000033035"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14622 IMAGE:4076036"
/tissue_type="Brain, primitive neuroectodermal"
/clone_lib="NIH_MGC_56"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1454
/gene="SMARCE1"
/gene_synonym="BAF57"
/db_xref="GeneID:6605"
/db_xref="HGNC:HGNC:11109"
/db_xref="MIM:603111"
CDS 122..1357
/gene="SMARCE1"
/gene_synonym="BAF57"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
/protein_id="AAH07082.1"
/db_xref="GeneID:6605"
/db_xref="HGNC:HGNC:11109"
/db_xref="MIM:603111"
/translation="MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGN
PSTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG
MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQR
QSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSV
VTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGL
KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSIVPEEEQAANKGEEKKD
DENIPMETEETHLEETTESQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESN
SATVEEPPTDPIPEDEKKE"
BASE COUNT 498 a 309 c 381 g 266 t
ORIGIN
1 ccggacgcga ggggcggggc gagcgcggga caaagggaag cgaagccgga gctgcgggcg
61 ctttttctgc ccgcggtgtc tcagattcat tcttaaggaa ctgagaactt aatcttccaa
121 aatgtcaaaa agaccatctt atgccccacc tcccacccca gctcctgcaa cacaaatgcc
181 cagcacacca gggtttgtgg gatacaatcc atacagtcat ctcgcctaca acaactacag
241 gctgggaggg aacccgagca ccaacagccg ggtcacggca tcctctggta tcacgattcc
301 aaaaccccca aagccaccag ataagccgct gatgccctac atgaggtaca gcagaaaggt
361 ctgggaccaa gtaaaggctt ccaaccctga cctaaagttg tgggagattg gcaagattat
421 tggtggcatg tggcgagatc tcactgatga agaaaaacaa gaatatttaa acgaatacga
481 agcagaaaag atagagtaca atgaatctat gaaggcctat cataattccc ccgcgtacct
541 tgcttacata aatgcaaaaa gtcgtgcaga agctgcttta gaggaagaaa gtcgacagag
601 acaatctcgc atggagaaag gagaaccgta catgagcatt cagcctgctg aagatccaga
661 tgattatgat gatggctttt caatgaagca tacagccacc gcccgtttcc agagaaacca
721 ccgcctcatc agtgaaattc ttagtgagag tgtggtgcca gacgttcggt cagttgtcac
781 aacagctaga atgcaggtcc tcaaacggca ggtccagtcc ttaatggttc atcagcgaaa
841 actagaagct gaacttcttc aaatagagga acgacaccag gagaagaaga ggaaattcct
901 ggaaagcaca gattcattta acaatgaact taaaaggttg tgcggtctga aagtagaagt
961 ggatatggag aaaattgcag ctgagattgc acaggcagag gaacaggccc gcaaaaggca
1021 ggaggaaagg gagaaggagg ccgcagagca agctgagcgc agtcagagca gcatcgttcc
1081 tgaggaagaa caagcagcta acaaaggcga ggagaagaaa gacgacgaga acattccgat
1141 ggagacagag gagacacacc ttgaagaaac aacagagagc caacagaatg gtgaagaagg
1201 cacgtctact cctgaggaca aggagagtgg gcaggagggg gtcgacagta tggcagagga
1261 aggaaccagt gatagtaaca ctggctcgga gagcaacagt gcaacagtgg aggagccacc
1321 aacagatccc ataccagaag atgagaaaaa agaataagtg ttgccttgtt ttgtgtgttc
1381 taaatacttt ttttaatgaa aaaatgtttt ttggttttaa tggggaaaaa aaaaaaaaaa
1441 aaaaaaaaaa aaaa
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