LOCUS BC007058 960 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens amyloid P component, serum, mRNA (cDNA clone MGC:12497
IMAGE:3934872), complete cds.
ACCESSION BC007058
VERSION BC007058.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 960)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 960)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375514.
FEATURES Location/Qualifiers
source 1..960
/db_xref="H-InvDB:HIT000033018"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12497 IMAGE:3934872"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..960
/gene="APCS"
/gene_synonym="PTX2"
/gene_synonym="SAP"
/db_xref="GeneID:325"
/db_xref="HGNC:HGNC:584"
/db_xref="MIM:104770"
CDS 97..768
/gene="APCS"
/gene_synonym="PTX2"
/gene_synonym="SAP"
/codon_start=1
/product="amyloid P component, serum"
/protein_id="AAH07058.1"
/db_xref="GeneID:325"
/db_xref="HGNC:HGNC:584"
/db_xref="MIM:104770"
/translation="MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITP
LEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSK
VIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYG
GKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIK
PLVWV"
BASE COUNT 269 a 211 c 218 g 262 t
ORIGIN
1 gggcatgaat atcagacgct agggggacag ccactgtgtt gtctgctacc ctcatcctgg
61 tcactgcttc tgctataaca gccctaggcc aggaatatga acaagccgct gctttggatc
121 tctgtcctca ccagcctcct ggaagccttt gctcacacag acctcagtgg gaaggtgttt
181 gtatttccta gagaatctgt tactgatcat gtaaacttga tcacaccgct ggagaagcct
241 ctacagaact ttaccttgtg ttttcgagcc tatagtgatc tctctcgtgc ctacagcctc
301 ttctcctaca atacccaagg cagggataat gagctactag tttataaaga aagagttgga
361 gagtatagtc tatacattgg aagacacaaa gttacatcca aagttatcga aaagttcccg
421 gctccagtgc acatctgtgt gagctgggag tcctcatcag gtattgctga attttggatc
481 aatgggacac ctttggtgaa aaagggtctg cgacagggtt actttgtgga agctcagccc
541 aagattgtcc tggggcagga acaggattcc tatgggggca agtttgatag gagccagtcc
601 tttgtgggag agattgggga tttgtacatg tgggactctg tgctgccccc agaaaatatc
661 ctgtctgcct atcagggtac ccctctccct gccaatatcc tggactggca ggctctgaac
721 tatgaaatca gaggatatgt catcatcaaa cccttggtgt gggtctgagg tcttgactca
781 acgagagcac ttgaaaatga aatgactgtc taagagatct ggtcaaagca actggatact
841 agatcttaca tctgcagctc tttcttcttt gaatttccta tctgtatgtc tgcctaatta
901 aaaaaatata tattgtatta tgctacctac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//