LOCUS BC006848 1268 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens itchy E3 ubiquitin protein ligase homolog (mouse),
mRNA (cDNA clone IMAGE:3451168), partial cds.
ACCESSION BC006848
VERSION BC006848.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1268)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1268)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: l Column: 22.
FEATURES Location/Qualifiers
source 1..1268
/db_xref="H-InvDB:HIT000086707"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3451168"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1268
/gene="ITCH"
/gene_synonym="AIF4"
/gene_synonym="AIP4"
/gene_synonym="dJ468O1.1"
/gene_synonym="NAPP1"
/db_xref="GeneID:83737"
/db_xref="HGNC:HGNC:13890"
/db_xref="MIM:606409"
CDS <1..358
/gene="ITCH"
/gene_synonym="AIF4"
/gene_synonym="AIP4"
/gene_synonym="dJ468O1.1"
/gene_synonym="NAPP1"
/codon_start=2
/product="ITCH protein"
/protein_id="AAH06848.1"
/db_xref="GeneID:83737"
/db_xref="HGNC:HGNC:13890"
/db_xref="MIM:606409"
/translation="QEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQ
FVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLK
EKLLFAIEETEGFGQE"
BASE COUNT 381 a 234 c 272 g 381 t
ORIGIN
1 gcaagagatt gatttgaatg actggcaaag acatgccatc taccgtcatt atgcaaggac
61 cagcaaacaa atcatgtggt tttggcagtt tgttaaagaa attgataatg agaagagaat
121 gagacttctg cagtttgtta ctggaacctg ccgattgcca gtaggaggat ttgctgatct
181 catggggagc aatggaccac agaaattctg cattgaaaaa gttgggaaag aaaattggct
241 acccagaagt catacctgtt ttaatcgcct ggacctgcca ccatacaaga gctatgagca
301 actgaaggaa aagctgttgt ttgccataga agaaacagaa ggatttggac aagagtaact
361 tctgagaact tgcaccatga atgggcaaga acttatttgc aatgtttgtc cttctctgcc
421 tgttgcacat cttgtaaaat tggacaatgg ctctttagag agttatctga gtgtaagtaa
481 attaatgttc tcatttagat ttatctccca gtgatttcta ctcagcgttt ccagaaatca
541 ggtctgcaaa tgactagtca gaaccttgct taacatgaga ttttaacaca acaatgaaat
601 ttgccttgtc ttattccact agtttattcc tttaacaaca atattttata tgtgtcaaaa
661 gtctcacttg ggagtagtgt ttttttcttt tagacattct gcagacatgc agggaagtcc
721 tttggtaact gcaatataca agattttcct attaagcctc ttggtaagag gcatttgtta
781 aaagtgcaag cttactcctg cttctgggga tgtgagcaaa attcgggctt gtgttctccc
841 tctcatttta gtctgacttg actattgttt ttcctttctg gcgcatgaat ccatacatca
901 ttcctggaag tgaggcaaga ctcttgcatc tctacaaagt agttttgtca atttgaattc
961 agggaaaagt tggtcacagc ctgcaaatga cttcatttgg aagtctgatt gtttcagttg
1021 cctgacaaat actacacttt acaaacaatg ttaacactgt gattccttca ttgttttaag
1081 aagttaacct agggccgggc atggtggctc atacctgtaa tcctagcact ctgggaggcc
1141 gaggcaggag gatcccttta gcccaggagt taaagaccag cctgggcaac atagggagac
1201 cctgtctttt ttttgggcag cgtggtgggg gataaataaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaa
//