LOCUS BC006558 2568 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens host cell factor C2, mRNA (cDNA clone MGC:2754
IMAGE:2823984), complete cds.
ACCESSION BC006558
VERSION BC006558.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2568)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2568)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC006558.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: d Column: 21
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2568
/db_xref="H-InvDB:HIT000032923"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2754 IMAGE:2823984"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2568
/gene="HCFC2"
/gene_synonym="HCF-2"
/gene_synonym="HCF2"
/db_xref="GeneID:29915"
/db_xref="HGNC:HGNC:24972"
/db_xref="MIM:607926"
CDS 20..1258
/gene="HCFC2"
/gene_synonym="HCF-2"
/gene_synonym="HCF2"
/codon_start=1
/product="HCFC2 protein"
/protein_id="AAH06558.1"
/db_xref="GeneID:29915"
/db_xref="HGNC:HGNC:24972"
/db_xref="MIM:607926"
/translation="MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEG
IADELHVYNTATNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYE
LQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYL
NDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR
LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPH
DCEWRCTSSFSYLNLDTTEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRD
GYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVSTVEGYLLQLST
DLPYQAASSDSSAAPNMQDQ"
BASE COUNT 808 a 503 c 571 g 686 t
ORIGIN
1 aggggcgggg gttgggaaga tggcggctcc cagcctcctc aactggaggc gagtttcttc
61 cttcacgggg ccggtccccc gcgcccggca cggacaccga gcggtggcca tccgggagct
121 gatgatcatc tttggagggg gaaatgaggg catcgcggat gagctgcacg tctacaacac
181 ggctacgaat cagtggtttc tgccagctgt tagaggagat atccctccag gctgtgctgc
241 ccatggattt gtctgtgatg gtaccagaat attagtattt gggggaatgg ttgaatatgg
301 aagatacagc aatgagttat atgagttaca agcaagtcgt tggttatgga aaaaagtgaa
361 accccatccc cctccttctg gtttacctcc ttgtcctcgg cttggacata gcttctcttt
421 atatggtaac aaatgctatt tgtttggtgg cctggcaaac gaaagcgaag attcaaacaa
481 taatgttccc agatatttaa atgattttta tgagttggag ctacagcatg gctctggtgt
541 tgtgggttgg agcattccag tgactaaagg ggttgtgcct tctccaagag aatcccacac
601 agctgttata tattgcaaaa aagattctgg aagtcctaaa atgtatgttt ttggtggaat
661 gtgtggtgct cgcctggatg acctatggca gcttgactta gaaactatgt catggtcaaa
721 accagaaact aaagggacag tgccacttcc acgaagcctt catacagcca gtgttatagg
781 aaacaagatg tacatttttg gtggatgggt cccacataag ggggaaaata ctgagacttc
841 acctcatgat tgtgaatgga gatgtaccag ttcattttct tacctaaatc tggatacaac
901 agagtggacc accctagtat cagattctca ggaagataaa aaaaattcaa gaccaagacc
961 aagagctggc cactgtgctg ttgcaatcgg cactcgattg tatttttgga gtggaagaga
1021 tggctacaaa aaagcactga atagtcaagt ttgctgcaag gatctttggt atcttgatac
1081 tgagaaacca ccggcaccat ctcaagtaca gctgatcaaa gccactacca actcctttca
1141 tgtcaagtgg gatgaagtgt ctacagttga gggctatctt ttgcagttga gtacagactt
1201 gccataccaa gctgcatcat cagattcttc agcagcacca aatatgcaag atcaatgata
1261 caataaacag cacaaaaact gaacagccag ccacaaaaga aacttcaatg aaaaacaaac
1321 cagactttaa agcactgacg gattctaatg ccattttata tccatctttg gcatcaaatg
1381 cttctaatca taatagtcat gtggtggata tgctaaggaa aaatgaaggt cctcacactt
1441 cagcaaatgt aggtgttcta agtagttgcc tggatgtaag aacagtaatt cctgaaacat
1501 ctgtatccag tactgtttcc agcacacaaa ctatggtaac ccagcagacc attaaaactg
1561 aatcatccag tacaaatggg gcagttgtta aagatgaaac ttcactaaca acattcagta
1621 ccaaatctga agttgatgaa acatatgcac tgcctgcaac gaagatcagc cgtgtagaga
1681 cacatgctac agcaacgccg ttttctaaag agactccttc aaatccagtg gccacagtga
1741 aagcgggaga acgacaatgg tgtgatgtgg gaatttttaa aaataataca gctttggtga
1801 gccagtttta tttgctgcca aaagggaagc aaagcatctc aaaggtagga aatgcagatg
1861 tacctgacta cagcttgctt aagaaacaag atcttgttcc aggcacagga tacagattca
1921 gggttgctgc aatcaatggt tgtgggatag gtcctttcag caaaatcagt gaatttaaaa
1981 cttgtattcc tggttttcct ggagctcctt ctgcagtcag aatttcaaag aatgttgaag
2041 gtatccacct ttcctgggaa cctccaacct caccttctgg aaatattttg gaatattcag
2101 cctacttggc tatccgcaca gcacagatac aagataatcc aagtcaactt gtgttcatga
2161 ggatttattg tggtcttaag acatcatgta tagtaactgc tgggcaactt gcaaatgcac
2221 atattgatta tacatccagg cctgccattg tgttcaggat atcagcaaag aatgaaaagg
2281 gatatggacc agctacacaa gttcggtggc ttcaaggtaa caataagaaa gcacctttaa
2341 attgaattgg tttttttact gaagctattg tgatgatgat tatttattag taactggtta
2401 tgaagatttg tcatttaaaa gagtattctc tggctgtatt tccagcagtt atgaacttga
2461 gtttgtaaat tgttcttaaa atgtatttgc tgaattatag atccaaataa aagaaaagaa
2521 gcaaagactc tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//