LOCUS BC006545 1891 bp mRNA linear HUM 08-OCT-2003
DEFINITION Homo sapiens forkhead box A2, mRNA (cDNA clone IMAGE:2821244),
partial cds.
ACCESSION BC006545
VERSION BC006545.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1891)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1891)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC006545.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: g Column: 19.
FEATURES Location/Qualifiers
source 1..1891
/db_xref="H-InvDB:HIT000086688"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2821244"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1891
/gene="FOXA2"
/gene_synonym="HNF3B"
/gene_synonym="MGC19807"
/gene_synonym="TCF3B"
/db_xref="GeneID:3170"
/db_xref="MIM:600288"
CDS <1..1370
/gene="FOXA2"
/gene_synonym="HNF3B"
/gene_synonym="MGC19807"
/gene_synonym="TCF3B"
/codon_start=3
/product="FOXA2 protein"
/protein_id="AAH06545.2"
/db_xref="GeneID:3170"
/db_xref="MIM:600288"
/translation="GAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYMSM
SAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGAAGVAGMGP
HLSPSLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPY
SYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKV
PRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLALKEAAGAAGSGKKAAA
GAQASQAQLGEAAGPASETPAGTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPA
PSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHH
HQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPLAADTSYYQGVYSRP
IMNSS"
misc_feature 471..758
/gene="FOXA2"
/gene_synonym="HNF3B"
/gene_synonym="MGC19807"
/gene_synonym="TCF3B"
/note="Fork_head; Region: Fork head domain"
/db_xref="CDD:pfam00250"
BASE COUNT 432 a 617 c 546 g 296 t
ORIGIN
1 tgggagcggt gaagatggaa gggcacgagc cgtccgactg gagcagctac tatgcagagc
61 ccgagggcta ctcctccgtg agcaacatga acgccggcct ggggatgaac ggcatgaaca
121 cgtacatgag catgtcggcg gccgccatgg gcagcggctc gggcaacatg agcgcgggct
181 ccatgaacat gtcgtcgtac gtgggcgctg gcatgagccc gtccctggcg gggatgtccc
241 ccggcgcggg cgccatggcg ggcatgggcg gctcggccgg ggcggctggc gtggcgggca
301 tggggccgca cttgagtccc agcctgagcc cgctcggggg gcaggcggcc ggggccatgg
361 gcggcctggc cccctacgcc aacatgaact ccatgagccc catgtacggg caggcgggcc
421 tgagccgcgc ccgcgacccc aagacctaca ggcgcagcta cacgcacgca aagccgccct
481 actcgtacat ctcgctcatc accatggcca tccagcagag ccccaacaag atgctgacgc
541 tgagcgagat ctaccagtgg atcatggacc tcttcccctt ctaccggcag aaccagcagc
601 gctggcagaa ctccatccgc cactcgctct ccttcaacga ctgtttcctg aaggtgcccc
661 gctcgcccga caagcccggc aagggctcct tctggaccct gcaccctgac tcgggcaaca
721 tgttcgagaa cggctgctac ctgcgccgcc agaagcgctt caagtgcgag aagcagctgg
781 cgctgaagga ggccgcaggc gccgccggca gcggcaagaa ggcggccgcc ggggcccagg
841 cctcacaggc tcaactcggg gaggccgccg ggccggcctc cgagactccg gcgggcaccg
901 agtcgcctca ctcgagcgcc tccccgtgcc aggagcacaa gcgagggggc ctgggagagc
961 tgaaggggac gccggctgcg gcgctgagcc ccccagagcc ggcgccctct cccgggcagc
1021 agcagcaggc cgcggcccac ctgctgggcc cgccccacca cccgggcctg ccgcctgagg
1081 cccacctgaa gccggaacac cactacgcct tcaaccaccc gttctccatc aacaacctca
1141 tgtcctcgga gcagcagcac caccacagcc accaccacca ccagccccac aaaatggacc
1201 tcaaggccta cgaacaggtg atgcactacc ccggctacgg ttcccccatg cctggcagct
1261 tggccatggg cccggtcacg aacaaaacgg gcctggacgc ctcgcccctg gccgcagata
1321 cctcctacta ccagggggtg tactcccggc ccattatgaa ctcctcttaa gaagacgacg
1381 gcttcaggcc cggctaactc tggcaccccg gatcgaggat aagtgagaga gcaagtgggg
1441 gtcgagactt tggggagacg gtgttgcaga gacgcaaggg agaagaaatc cataacaccc
1501 ccaccccaac acccccaaga cagcagtctt ccttcacccg ctgcagctgt tccgtcccaa
1561 acagagggcc acacagatac cccacgttct atataaggag gaaaacggga aagaatataa
1621 agttaaaaaa aagcctccgg tttccactac tgtgtagact cctgcttctt caagcacctg
1681 cagattctga tttttttgtt gttgttgttc tcctccattg ctgttgttgc agggaagtct
1741 tacttaaaaa aaaaaaaaaa cttttgtgag tgactcggtg taaaaccatg tagttttaac
1801 agaaccagag ggttgtacta ttgtttaaaa acaggaaaaa aaataatgta agggtctgtt
1861 gtaaatgacc aagaaaaaaa aaaaaaaaaa a
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