LOCUS BC006539 1484 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class
C, mRNA (cDNA clone MGC:2049 IMAGE:2823399), complete cds.
ACCESSION BC006539
VERSION BC006539.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1484)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1484)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006539.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24430185.
FEATURES Location/Qualifiers
source 1..1484
/db_xref="H-InvDB:HIT000032909"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2049 IMAGE:2823399"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1484
/gene="PIGC"
/gene_synonym="GPI2"
/gene_synonym="MGC2049"
/db_xref="GeneID:5279"
/db_xref="HGNC:HGNC:8960"
/db_xref="MIM:601730"
CDS 282..1175
/gene="PIGC"
/gene_synonym="GPI2"
/gene_synonym="MGC2049"
/codon_start=1
/product="phosphatidylinositol glycan anchor biosynthesis,
class C"
/protein_id="AAH06539.1"
/db_xref="GeneID:5279"
/db_xref="HGNC:HGNC:8960"
/db_xref="MIM:601730"
/translation="MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHAR
KYQYWAVVFESSVVIQQLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDL
IDGGEGRKKSGQTRWADLKSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGH
LIFFDYGANAAIVSSTLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQK
KLKACTPRSYVGVTLLFAFSAVGGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFK
ENIHGPWDEAEIKEDLSRFLS"
BASE COUNT 395 a 320 c 353 g 416 t
ORIGIN
1 gccccggcgc cccgaagcgg gaaaaaggct gggtgccgcc gtcccccagc tgcgcaaccc
61 taggaactct cgggaacttg gctgtgttgt cctgcctcag agacaaattc atctattgta
121 ggcctagccc ctgcctttga aaacaaggaa aggttggtag aacatcaaca cagcatggaa
181 tttccaggga ggtctcattt caaaacttca taaagaacaa gaaccacctg gacttctgtg
241 agggcgatga ttaaactggc ctgagtttga atgaaaggat aatgtatgct caacctgtga
301 ctaacaccaa ggaggtcaag tggcagaagg tcttgtatga gcgacagccc tttcctgata
361 actatgtgga ccggcgattc ctggaagagc tccggaaaaa catccatgct cggaaatacc
421 aatattgggc tgtggtattt gagtccagtg tggtgatcca gcagctgtgc agtgtttgtg
481 tttttgtggt tatctggtgg tatatggatg agggtcttct ggccccccat tggcttttag
541 ggactggtct ggcttcttca ctgattgggt atgttttgtt tgatctcatt gatggaggtg
601 aagggcggaa gaagagtggg cagacccggt gggctgacct gaagagtgcc ctagtcttca
661 ttactttcac ttatgggttt tcaccagtgc tgaagaccct tacagagtct gtcagcactg
721 acaccatcta tgccatgtca gtcttcatgc tgttaggcca tctcatcttt tttgactatg
781 gtgccaatgc tgccattgta tccagcacac tatccttgaa catggccatc tttgcttctg
841 tatgcttggc atcacgtctt ccccggtccc tgcatgcctt catcatggtg acatttgcca
901 ttcagatttt tgccctgtgg cccatgttgc agaagaaact aaaggcatgt actccccgga
961 gctatgtggg ggtcacactg ctttttgcat tttcagccgt gggaggccta ctgtccatta
1021 gtgctgtggg agccgtactc tttgcccttc tgctgatgtc tatctcatgt ctgtgtccat
1081 tctacctcat tcgcttgcag ctttttaaag aaaacattca tgggccttgg gatgaagctg
1141 aaatcaagga agacttgtcc aggttcctca gttaaattag gacatccatt acattattaa
1201 agcaagctga tagattagcc tcctaactag tatagaactt aaagacagag ttccattctg
1261 gaagcagcat gtcattgtgg taagagaata gagatcaaaa ccaaaaaaaa tgaaccaaag
1321 gcttgggtgg tgagggtgct tatcctttct gttattttgt agatgaaaaa actttctggg
1381 gacctcttga attacatgct gtaacatatg aagtgatgtg gtttctatta aaaaaataac
1441 acatccaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//