LOCUS BC006536 3916 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens symplekin, mRNA (cDNA clone IMAGE:2963685), partial
cds.
ACCESSION BC006536
VERSION BC006536.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3916)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3916)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006536.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759195.
FEATURES Location/Qualifiers
source 1..3916
/db_xref="H-InvDB:HIT000032906"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2963685"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3916
/gene="SYMPK"
/gene_synonym="SPK"
/gene_synonym="SYM"
/db_xref="GeneID:8189"
/db_xref="HGNC:HGNC:22935"
/db_xref="MIM:602388"
CDS <1..3777
/gene="SYMPK"
/gene_synonym="SPK"
/gene_synonym="SYM"
/codon_start=1
/product="SYMPK protein"
/protein_id="AAH06536.2"
/db_xref="GeneID:8189"
/db_xref="HGNC:HGNC:22935"
/db_xref="MIM:602388"
/translation="QFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLL
RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDN
DGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA
ALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKS
QVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPR
DDSDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTP
DNVANLVLISMVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGV
EQTKQCKEEPKEEKVVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPE
PIIPVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAA
QVRIKILASLVTQFNSGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLD
KYEDCLIRLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMST
LRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNY
LQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTE
AIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPE
LVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQH
GEGNSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQL
MEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTK
PQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEASGKQ
EPEAKEAPAGPLEEDDLEPLTLAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKLKPG
GVGAPSSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLD
SSLEGPLPKETAAGGLTLKEERSPQTLAPVGEDAMKTPSPAAEDAREPEAKGNS"
BASE COUNT 896 a 1198 c 1150 g 672 t
ORIGIN
1 cagtttttca ctcaagagga ggggccgggc atcgatggca tgaccacctc agagagggtg
61 gtggatcttc tgaaccaggc ggcgctgatc accaatgact caaagatcac agtgctcaaa
121 caggtccagg agctgatcat caacaaagac cccacactac tggacaactt cctggatgag
181 atcatcgcat tccaagcaga caagtcaatc gaagtgcgaa aatttgtcat cggcttcatc
241 gaggaggcat gcaagcgaga catcgagttg ctgctgaaac tcattgcaaa cctcaacatg
301 ctcttgaggg acgagaatgt gaacgtggtg aagaaggcta tcctcaccat gacccagctc
361 tacaaggtgg ccctgcagtg gatggtaaag tcacgggtca ttagcgagct acaggaggcc
421 tgctgggaca tggtatctgc catggcgggg gacatcatcc tgctattgga ctctgacaat
481 gacggcatcc gcacccacgc catcaagttt gtggagggcc tcattgtcac cctgtcaccc
541 cgcatggctg actcagagat accccgacgc caggagcatg atatcagcct ggaccgcatc
601 cctcgtgacc acccctacat ccagtacaac gtgctatggg aagagggcaa ggcagccttg
661 gagcagctgc ttaagttcat ggtgcaccct gccatctcct ccatcaacct gaccacagcg
721 ctgggctccc ttgccaatat cgcccgccag agacccatgt tcatgtctga ggtgatccag
781 gcctatgaaa ctctgcatgc caacctgccc ccgacgctgg ccaaatcgca ggtgagcagt
841 gtgcgtaaga atctgaagct gcacctgttg agtgtgctga agcacccggc ttccttggag
901 ttccaggccc agatcaccac cctgctggtg gacctgggca cacctcaggc cgagatcgcc
961 cgcaacatgc cgagcagcaa ggacacccgc aagcggcccc gcgatgactc ggactccaca
1021 ctcaagaaga tgaagctgga gcccaacctg ggggaggacg atgaggacaa agacttggag
1081 ccaggcccat cggggacctc gaaggcctca gcgcagatct ccggccagtc agacacggac
1141 atcacagctg agttcctgca gcctctgctg acgcctgata atgtggctaa tctggtcctc
1201 atcagcatgg tgtacctacc cgaggccatg ccagcctcct tccaggccat ctacaccccc
1261 gtggagtcag caggcacgga agcccagatc aagcacctgg ctcggctcat ggccacacag
1321 atgacagctg ccggactggg accaggtgta gagcagacca aacagtgcaa ggaggagccc
1381 aaggaggaga aggtggtgaa gacagagagc gtcctgatca agcggcgcct gtcagcccag
1441 ggccaagcca tctcggtggt gggttccctg agctccatgt cccccctgga ggaagaggca
1501 ccgcaggcca agaggaggcc agagcccatt atccctgtca ctcagccccg gctggcaggc
1561 gctggtgggc gcaagaaaat tttccgtctc agcgacgtgc tgaagcccct taccgatgcc
1621 caggtggaag ccatgaagct gggcgctgtg aagcggatcc tgcgggctga gaaggctgtg
1681 gcctgcagcg gggcagccca ggtccgcata aagatcctgg ccagcctggt gacacagttc
1741 aactcgggcc tgaaggcgga ggtcctgtcc ttcatcctgg aggatgtgcg ggcccgcctg
1801 gacctggcct tcgcctggct ctaccaggag tacaacgcct acctggccgc aggtgcctcg
1861 ggctccctgg acaagtatga ggactgcctc atccgcctgt tgtctggcct gcaggagaaa
1921 ccagaccaga aggatgggat cttcaccaag gttgtgctgg aggcgccact catcacagag
1981 agtgccctgg aggtggtccg caagtactgc gaggatgaga gtcgcaccta tctgggcatg
2041 tccacacttc gagacctgat cttcaagcgc ccgtcccgcc agttccagta cctgcatgtc
2101 ctcctcgacc tcagctccca tgagaaggac aaggtgcgct cccaggccct gctgttcatc
2161 aaacgcatgt atgagaagga gcagctgcgg gagtatgtgg agaaatttgc cctcaactac
2221 ctgcagctcc tggtgcaccc caacccaccg tctgtgctgt ttggagctga caaggacaca
2281 gaggtggcag caccctggac ggaggagaca gtgaagcagt gtctgtacct ctacctggcc
2341 ctcctgcctc agaaccacaa gctgatccac gaactggcgg ccgtgtacac tgaagccatc
2401 gccgacatca agcggacggt gctgagggtc attgagcagc cgatccgagg aatgggcatg
2461 aactccccgg agctgctcct gctggtggaa aattgtccca agggagcaga gacactggtc
2521 acgagatgtc tgcacagcct cacagacaaa gtcccaccct ccccagagct ggtgaagcgg
2581 gtccgggatc tctaccacaa gcgactgcca gacgtccgct tcctcatccc ggtgctcaat
2641 gggctggaga agaaagaggt gatccaggcc ctgcctaaac tcatcaaact caaccccatc
2701 gtggtgaagg aagtcttcaa ccgcctgctg ggcacccagc atggtgaggg aaactcagcc
2761 ttgtccccgc tgaaccctgg agagctcctg atcgcattac acaacattga ctccgtgaag
2821 tgcgacatga aatccatcat caaagccacc aacctgtgct ttgcggagcg gaacgtgtac
2881 acgtcagagg tgctggccgt ggtgatgcag cagctgatgg agcagagccc cctgcccatg
2941 ctgctcatga ggaccgtcat ccagtccctg accatgtacc cccgcctggg gggcttcgtc
3001 atgaacatcc tgtcccgcct catcatgaag caggtgtgga agtaccccaa ggtgtgggag
3061 ggcttcatca agtgctgcca gcgcacaaag ccccagagct tccaggtcat cctgcagctg
3121 ccgccccagc agctgggagc cgtctttgac aagtgcccag agctccggga gcccctgctg
3181 gcccatgtcc gctccttcac cccccaccag caagctcaca tccctaactc catcatgacc
3241 atcttggagg ccagcggcaa gcaggagcca gaggccaagg aggcgcctgc ggggcccttg
3301 gaggaggatg atctggagcc cctgaccttg gccccggccc cagcaccccg gccccctcag
3361 gacctcatcg gcctgcgact ggcccaggag aaggccttaa agcggcagct ggaggaggaa
3421 cagaagctga agccgggagg agtgggagcc ccctcctctt cctccccctc tccctctccg
3481 tcggcccggc caggcccgcc cccgtctgag gaagccatgg atttccggga ggaggggcct
3541 gagtgcgaga ccccgggcat cttcatcagc atggatgacg actcggggct gaccgaggcc
3601 gcgctgttgg actctagtct cgagggcccc ctacccaagg agacggcagc gggcgggctg
3661 accttgaagg aggagcggag cccccagacc ctcgcacctg ttggagaaga tgctatgaag
3721 actcccagcc cggctgccga ggacgccagg gaacccgagg ccaaggggaa cagctgacgg
3781 ggctcgaggg ggaaaggggg tgggacaggg actcggggct gggggacggg gcggggcttg
3841 acctgcgggt gctttgcctt aaaaagaaat aaaagatgtg aacttggaaa aaaaaaaaaa
3901 aaaaaaaaaa aaaaaa
//