LOCUS BC006518 2131 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens PDZ domain containing 1, mRNA (cDNA clone MGC:3680 IMAGE:2959384), complete cds. ACCESSION BC006518 VERSION BC006518.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2131) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2131) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-APR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC006518.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 10 Row: k Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34147647. FEATURES Location/Qualifiers source 1..2131 /db_xref="H-InvDB:HIT000032893" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3680 IMAGE:2959384" /tissue_type="Colon, adenocarcinoma" /clone_lib="NIH_MGC_15" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2131 /gene="PDZK1" /gene_synonym="CAP70" /gene_synonym="CLAMP" /gene_synonym="PDZD1" /db_xref="GeneID:5174" /db_xref="HGNC:HGNC:8821" /db_xref="MIM:603831" CDS 98..1657 /gene="PDZK1" /gene_synonym="CAP70" /gene_synonym="CLAMP" /gene_synonym="PDZD1" /codon_start=1 /product="PDZ domain containing 1" /protein_id="AAH06518.1" /db_xref="GeneID:5174" /db_xref="HGNC:HGNC:8821" /db_xref="MIM:603831" /translation="MTSTFNPRECKLSKQEGQNYGFFLRIEKDTEGHLVRVVEKCSPA EKAGLQDGDRVLRINGVFVDKEEHMQVVDLVRKSGNSVTLLVLDGDSYEKAVKTRVDL KELGQSQKEQGLSDNILSPVMNGGVQTWTQPRLCYLVKEGGSYGFSLKTVQGKKGVYM TDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK RHVEQKIQFKRETASLKLLPHQPRIVEMKKGSNGYGFYLRAGSEQKGQIIKDIDSGSP AEEAGLKNNDLVVAVNGESVETLDHDSVVEMIRKGGDQTSLLVVDKETDNMYRLAHFS PFLYYQSQELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHL NAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNV TLLVCGKKAYDYFQAKKIPIVSSLADPLDTPPDSKEGIVVESNHDSHMAKERAHSTAS HSSSNSEDTEM" BASE COUNT 633 a 415 c 539 g 544 t ORIGIN 1 gagcagctcc tcttccatct ccagggtctc attctgttgc ccaggctgga gtgcagtggt 61 gcgatctcgg ctcacagcaa cctctctgcc tccagaaatg acctccacct tcaacccccg 121 agaatgtaaa ctgtccaagc aagaagggca aaactatggc ttcttcctgc gaattgagaa 181 ggacaccgag ggccacctgg tccgggtggt tgagaagtgt agcccagcag agaaggctgg 241 ccttcaagat ggagacagag ttcttaggat caatggtgtc tttgtggaca aagaagaaca 301 tatgcaggtt gtggatctgg tcagaaagag tgggaattca gtgactttac tagttctgga 361 tggggattcc tatgagaaag cagtgaaaac acgggtggac ttgaaagagt tgggtcaaag 421 tcagaaggag caaggtttga gtgataatat actttcccct gtgatgaatg gaggtgtgca 481 aacttggacc cagccccggc tctgctatct cgtgaaggaa ggaggcagct atggcttctc 541 tctgaaaact gtccaaggta aaaagggggt gtacatgact gatattacac ctcaaggtgt 601 ggctatgaga gctggagttc tggctgatga tcacttgatt gaagtgaatg gagagaatgt 661 agaggatgcc agccatgagg aagtggttga aaaggtgaag aagtcaggaa gccgtgtcat 721 gttcctgctg gtggacaaag aaactgacaa gcgtcatgtt gagcagaaga tacaattcaa 781 aagagaaaca gccagtttga aactgttacc ccaccagccc cgaattgtgg agatgaagaa 841 aggaagcaat ggctatggtt tctatctgag ggcaggctca gaacagaaag gtcaaatcat 901 caaggacata gattctggaa gtccagcaga ggaggctggc ttgaagaaca atgatctggt 961 agttgctgtc aacggcgagt ctgtggaaac cctggatcat gacagtgtgg tagaaatgat 1021 tagaaagggt ggagatcaga cttcactgtt ggtggtagac aaagagacgg acaacatgta 1081 cagactggct catttttctc catttctcta ctatcaaagt caagaactgc ccaatggctc 1141 tgtcaaggag gctccagctc ctactcccac ttctctggaa gtctcaagtc caccagatac 1201 tacagaggaa gtagatcata agcctaaact ctgcaggctg gctaaaggtg aaaatggcta 1261 tggctttcac ttaaatgcga ttcggggtct gccaggctca ttcatcaaag aggtacagaa 1321 gggcggtcct gctgacttgg ctgggctaga ggatgaggat gtcatcattg aagtgaatgg 1381 ggtgaatgtg ctagatgaac cctatgagaa ggtggtggat agaatccaga gcagtgggaa 1441 gaatgtcaca cttctagtct gtggaaagaa ggcctatgat tatttccaag ctaagaaaat 1501 ccctattgtt tcctccctgg ctgatccact tgacacccct ccagattcta aagaaggaat 1561 agtggtggag tcaaaccatg actcgcacat ggcaaaagaa cgggcccaca gtacagcctc 1621 acattcttct tccaattctg aagatacaga gatgtgatga aaacaagtaa tagctttggc 1681 tgtttatttg atagctgttt ctgggtattt aataggaatc ctttctcaag gaatgagttg 1741 tgacctgttt actgtctctt tagaagaaaa actccactgg aaaccattca ccatgtgtga 1801 ttgtcttctg ttatcatttg tcttacaggc ggctattgca gacggctaat ttatgcttaa 1861 cttaggaaga gataaggcaa gagctagatt tttttcatgt gatcttttcc aagcttcaac 1921 ttaacttaac tacatttctc tgtatgatga tgtctcttac ttctacaggt tccttgagca 1981 ccaaagatga ttcataactc tgtataggtg acagctgctt ataaaagcat cttagcagat 2041 aagcctatta aaattgtgct tttgtaacaa tgttgtggtt gctagaataa ataccattaa 2101 caaatgcaaa aaaaaaaaaa aaaaaaaaaa a //