LOCUS BC006518 2131 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PDZ domain containing 1, mRNA (cDNA clone MGC:3680
IMAGE:2959384), complete cds.
ACCESSION BC006518
VERSION BC006518.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2131)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2131)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006518.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147647.
FEATURES Location/Qualifiers
source 1..2131
/db_xref="H-InvDB:HIT000032893"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3680 IMAGE:2959384"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2131
/gene="PDZK1"
/gene_synonym="CAP70"
/gene_synonym="CLAMP"
/gene_synonym="PDZD1"
/db_xref="GeneID:5174"
/db_xref="HGNC:HGNC:8821"
/db_xref="MIM:603831"
CDS 98..1657
/gene="PDZK1"
/gene_synonym="CAP70"
/gene_synonym="CLAMP"
/gene_synonym="PDZD1"
/codon_start=1
/product="PDZ domain containing 1"
/protein_id="AAH06518.1"
/db_xref="GeneID:5174"
/db_xref="HGNC:HGNC:8821"
/db_xref="MIM:603831"
/translation="MTSTFNPRECKLSKQEGQNYGFFLRIEKDTEGHLVRVVEKCSPA
EKAGLQDGDRVLRINGVFVDKEEHMQVVDLVRKSGNSVTLLVLDGDSYEKAVKTRVDL
KELGQSQKEQGLSDNILSPVMNGGVQTWTQPRLCYLVKEGGSYGFSLKTVQGKKGVYM
TDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK
RHVEQKIQFKRETASLKLLPHQPRIVEMKKGSNGYGFYLRAGSEQKGQIIKDIDSGSP
AEEAGLKNNDLVVAVNGESVETLDHDSVVEMIRKGGDQTSLLVVDKETDNMYRLAHFS
PFLYYQSQELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHL
NAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNV
TLLVCGKKAYDYFQAKKIPIVSSLADPLDTPPDSKEGIVVESNHDSHMAKERAHSTAS
HSSSNSEDTEM"
BASE COUNT 633 a 415 c 539 g 544 t
ORIGIN
1 gagcagctcc tcttccatct ccagggtctc attctgttgc ccaggctgga gtgcagtggt
61 gcgatctcgg ctcacagcaa cctctctgcc tccagaaatg acctccacct tcaacccccg
121 agaatgtaaa ctgtccaagc aagaagggca aaactatggc ttcttcctgc gaattgagaa
181 ggacaccgag ggccacctgg tccgggtggt tgagaagtgt agcccagcag agaaggctgg
241 ccttcaagat ggagacagag ttcttaggat caatggtgtc tttgtggaca aagaagaaca
301 tatgcaggtt gtggatctgg tcagaaagag tgggaattca gtgactttac tagttctgga
361 tggggattcc tatgagaaag cagtgaaaac acgggtggac ttgaaagagt tgggtcaaag
421 tcagaaggag caaggtttga gtgataatat actttcccct gtgatgaatg gaggtgtgca
481 aacttggacc cagccccggc tctgctatct cgtgaaggaa ggaggcagct atggcttctc
541 tctgaaaact gtccaaggta aaaagggggt gtacatgact gatattacac ctcaaggtgt
601 ggctatgaga gctggagttc tggctgatga tcacttgatt gaagtgaatg gagagaatgt
661 agaggatgcc agccatgagg aagtggttga aaaggtgaag aagtcaggaa gccgtgtcat
721 gttcctgctg gtggacaaag aaactgacaa gcgtcatgtt gagcagaaga tacaattcaa
781 aagagaaaca gccagtttga aactgttacc ccaccagccc cgaattgtgg agatgaagaa
841 aggaagcaat ggctatggtt tctatctgag ggcaggctca gaacagaaag gtcaaatcat
901 caaggacata gattctggaa gtccagcaga ggaggctggc ttgaagaaca atgatctggt
961 agttgctgtc aacggcgagt ctgtggaaac cctggatcat gacagtgtgg tagaaatgat
1021 tagaaagggt ggagatcaga cttcactgtt ggtggtagac aaagagacgg acaacatgta
1081 cagactggct catttttctc catttctcta ctatcaaagt caagaactgc ccaatggctc
1141 tgtcaaggag gctccagctc ctactcccac ttctctggaa gtctcaagtc caccagatac
1201 tacagaggaa gtagatcata agcctaaact ctgcaggctg gctaaaggtg aaaatggcta
1261 tggctttcac ttaaatgcga ttcggggtct gccaggctca ttcatcaaag aggtacagaa
1321 gggcggtcct gctgacttgg ctgggctaga ggatgaggat gtcatcattg aagtgaatgg
1381 ggtgaatgtg ctagatgaac cctatgagaa ggtggtggat agaatccaga gcagtgggaa
1441 gaatgtcaca cttctagtct gtggaaagaa ggcctatgat tatttccaag ctaagaaaat
1501 ccctattgtt tcctccctgg ctgatccact tgacacccct ccagattcta aagaaggaat
1561 agtggtggag tcaaaccatg actcgcacat ggcaaaagaa cgggcccaca gtacagcctc
1621 acattcttct tccaattctg aagatacaga gatgtgatga aaacaagtaa tagctttggc
1681 tgtttatttg atagctgttt ctgggtattt aataggaatc ctttctcaag gaatgagttg
1741 tgacctgttt actgtctctt tagaagaaaa actccactgg aaaccattca ccatgtgtga
1801 ttgtcttctg ttatcatttg tcttacaggc ggctattgca gacggctaat ttatgcttaa
1861 cttaggaaga gataaggcaa gagctagatt tttttcatgt gatcttttcc aagcttcaac
1921 ttaacttaac tacatttctc tgtatgatga tgtctcttac ttctacaggt tccttgagca
1981 ccaaagatga ttcataactc tgtataggtg acagctgctt ataaaagcat cttagcagat
2041 aagcctatta aaattgtgct tttgtaacaa tgttgtggtt gctagaataa ataccattaa
2101 caaatgcaaa aaaaaaaaaa aaaaaaaaaa a
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