LOCUS BC006440 1815 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens bestrophin 3, mRNA (cDNA clone IMAGE:3344939),
complete cds.
ACCESSION BC006440
VERSION BC006440.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1815)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1815)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: c Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14249355
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1815
/db_xref="H-InvDB:HIT000032836"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3344939"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1815
/gene="BEST3"
/gene_synonym="MGC13168"
/gene_synonym="MGC40411"
/db_xref="GeneID:144453"
/db_xref="HGNC:HGNC:17105"
/db_xref="MIM:607337"
CDS 201..419
/gene="BEST3"
/gene_synonym="MGC13168"
/gene_synonym="MGC40411"
/codon_start=1
/product="BEST3 protein"
/protein_id="AAH06440.1"
/db_xref="GeneID:144453"
/db_xref="HGNC:HGNC:17105"
/db_xref="MIM:607337"
/translation="MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKR
FPTMDHVVEAERTGMKPILPSSFEMQSF"
BASE COUNT 603 a 340 c 415 g 457 t
ORIGIN
1 agaaaatctg actgtgcacg agcgaagggt gacaccgggc gtgcagcacc gacctgaagg
61 cacctcttcg ggggagcccg aaatttgaag attctctttc ctgtcggaga ctacaaacca
121 aataaatagg gttttatgtt actctggtag tgaaccgatg gtggaaccag tttgtgaatt
181 tgccctggcc agacaggcta atgttcctca tctctagcag tgttcacgga agcgacgagc
241 acgggcgcct gcttagaagg acgctgatgc gctacgtcaa tctcacctcc ctgctcatct
301 ttcgctcggt gagcactgct gtgtacaaaa gatttcccac aatggaccac gtggttgaag
361 cagaaagaac tggcatgaaa cccattctgc cttcaagttt tgagatgcag agcttttagt
421 tcctctgcta atagagcctc gtttgaatac tctgcttgaa aggcaaaaga catctgcctc
481 aacttcaatc aaggaaaaat agagcaactg tacagcaggc agaatctcta tgatgactgg
541 aattttgtct atcaatggat gtaattaatc ctttggctca agggcaataa aattttgtct
601 taaagtagca gatcctgctc catcaaagca caactcaatt gggagtaaat gcaaacatgt
661 atctatattg agagatagat tttactctga ttagaaagat gaaggaggga tttggggata
721 aacaatatga aaattgctga gcagagctga gccagccaga agaaaaagcg atagcaagag
781 aaactgtagg cagatgcaac ggcaggataa aatagctatg ccaggggtgt gatggggcct
841 gaggagagca tggcatggag acagacacgt gcagggaacc aagtggtggg aggacaagcc
901 cactcagagt gttgccgaac tgtagcaaat cagtaactat aattagcata gcctcagcaa
961 tgacaataat gatcatattc tgaaaaaaat attggtctct gcttaaaatg gcttgaagtc
1021 ctgatgaggg tgacattcca tttcataaca aatacttttg gaatggactt gaccaacaac
1081 ctagagattt tctttcagtt gaccaacttt gatttccaaa ggtggagtta cttttgtgaa
1141 cccccaaaat ctgagacagg tctcagttaa tttagaaagt ttattttgcc agggttgagg
1201 atgtgcaccc gtgacacagc ctcaggtggt cctgatgaca tgtgcccaaa gcggtcagaa
1261 cagtttggtt ttatgcattg taggaagaca tgagacatcg atcaacatat gtaagataaa
1321 cattggttca gtctggaaaa gccagagatg actcaaagtg gggagggggc ttccgggtca
1381 taggtaggta agagacaaat ggttgcattc ttctgggttt ctgattagtc tctccaaagg
1441 aggcaatcag atatgcattt atctcagtga acggagcaat gactttaata gaatgggagg
1501 catgtatgcc gtaagcagtt cccaacttga cttttccctt tagcttagtg attttgggga
1561 cccaagatat tttcctttca cactttggat aagtaagatg tgtgaccctg caaggaataa
1621 caaaaattat tctgcttata tattcttaga ggatacatta atgtctcagt gattgtcatt
1681 catctttcac agcgcccagc aaaatactca ataaatttgt gctaaaaaca aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaacc tcggg
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