LOCUS BC006437 3166 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4040321), partial
cds.
ACCESSION BC006437
VERSION BC006437.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3166)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3166)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: o Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27501457.
FEATURES Location/Qualifiers
source 1..3166
/db_xref="H-InvDB:HIT000086664"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4040321"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3166
/gene="CHTF18"
/gene_synonym="C321D2.2"
/gene_synonym="C321D2.3"
/gene_synonym="C321D2.4"
/gene_synonym="CHL12"
/gene_synonym="Ctf18"
/gene_synonym="RUVBL"
/db_xref="GeneID:63922"
CDS <1..3051
/gene="CHTF18"
/gene_synonym="C321D2.2"
/gene_synonym="C321D2.3"
/gene_synonym="C321D2.4"
/gene_synonym="CHL12"
/gene_synonym="Ctf18"
/gene_synonym="RUVBL"
/codon_start=1
/product="CHTF18 protein"
/protein_id="AAH06437.1"
/db_xref="GeneID:63922"
/translation="AGGSERELGLADGMEDYEQELCGVEDDFHNQFAAELEVLAELEG
ASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQP
AGSLPHGRLAALPQGLRSGREAEEASGSLHVSPPAPRIKRPRLQVVKRLNFRSEEMEE
PPPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDY
VHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDGERR
ERLLQEAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTE
LLSDDFTNRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWKSHEQVL
EEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVF
RTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAV
PSGGGRRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEV
SLRQGMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQR
RGLFSVWQEVFQLPRAQRRRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAAS
AGEHEKVVQGLFDNFLRLRLRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPP
FLPVAFHVLFASSHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQAL
LLDALCLLLDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERTPDGQYIY
RLEPNVEELCRFPELPARKPLTYQTKQLIAREIEVEKMRRAEASARVENSPQVDGSPP
GLEGLLGGIGEKGVHRPAPRNHEQRLEHIMRRAAREEQPEKDFFGRVVVRSTAVPSAG
DTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL"
BASE COUNT 561 a 1030 c 1074 g 501 t
ORIGIN
1 gcgggaggtt cggagcggga gctcgggctc gcggacggta tggaggacta cgagcaggag
61 ctgtgcggcg tcgaggatga tttccacaac cagttcgcgg ccgagctgga ggtgctggca
121 gagctggaag gggcgtcgac tccgtcgccc tccggggtcc ccctgttcac cgcgggccga
181 cccccgcgga cgttcgagga ggcccttgcc agaggggacg cggcctccag tcccgcccca
241 gccgcatctg tgggcagcag ccagggcggc gccaggaaga ggcaggtgga cgccgacctg
301 cagccggccg ggtccctgcc ccacggtagg ttggcggcat tgccccaggg cctccggagt
361 gggcgcgagg ctgaggaggc ctctggttcc ctgcatgtgt ctcccccagc ccccaggatc
421 aaacggccta ggctgcaggt ggtcaagagg ctgaacttca ggtcggagga gatggaggag
481 ccgccccctc ccgactcctc gccgacggac atcaccccgc cgccgagccc tgaggacctc
541 gcagagcttt ggggccacgg agtctcagaa gctgctgccg acgtgggtct cacacgggcc
601 tcaccagctg cccgcaatcc cgtcctgagg cggcccccca tcttggagga ctacgtccac
661 gtgacatcca cggagggcgt ccgggcttat ctggtgctgc gtgctgaccc catggccccg
721 ggggtgcagg gctctctcct ccacgtccca tggcgaggcg gtggccagct ggacctgctg
781 ggtgtgtcct tagcctccct gaagaagcag gtcgacggcg agcggcggga gcggctgctt
841 caggaggccc agaagctttc agacaccctg cacagtctca ggtcggggga ggaggaggca
901 gcccagccct tgggggcccc tgaggaggag ccgactgacg gtcaagacgc ctccagtcac
961 tgcctctggg tggatgagtt tgcaccccgc cactacacgg agctgctcag tgatgacttc
1021 accaaccgct gcctgctcaa gtggctgaag ttgtgggacc tggtggtgtt tggccacgag
1081 aggccttccc ggaagcccag gcccagtgtt gagccggccc gggtcagcaa ggaggccaca
1141 gccccaggca agtggaagag ccacgaacag gtgctggagg agatgctgga ggctgggctg
1201 gacccgagcc agcgaccgaa gcagaaggtg gcactgctct gtgggccccc ggggctgggg
1261 aagaccaccc tggcacacgt gattgcgcgt cacgcggggt actctgtggt ggagatgaac
1321 gccagtgacg accgtagccc ggaggtcttc cgcacacgca tcgaggcggc cacccagatg
1381 gagtcggtgc tgggtgctgg cgggaagccc aactgcctgg tcatcgatga gatcgacggg
1441 gcccccgtgg ccgccatcaa cgtcctcctg agcatcctga accgcaaggg gccacaggag
1501 gtggggccac agggcccggc tgtgccttcg ggaggcggcc gacggcgccg ggcagagggg
1561 gggctcctca tgaggcccat tatctgcatt tgcaatgacc agttcgcacc gtccctgcgg
1621 cagctgaagc agcaggcctt cctgctccac ttcccgccga ctctgccctc gaggctggtg
1681 cagcggctcc aggaggtctc cctgcggcag ggcatgaggg ccgacccagg ggtgctggcc
1741 gccctctgtg agaaaactga caatgacatc cgggcctgca tcaacaccct gcagttcctg
1801 tacagccggg gccagcggga gctgagcgtg cgggacgtgc aggccacacg cgtgggcctc
1861 aaggaccagc gcagagggct cttctcggtg tggcaggagg tcttccagct gcctcgagcc
1921 cagaggcgcc gtgtgggcca ggaccccgcc ctgcctgctg acacactcct gctgggtgac
1981 ggggacgcgg gctccctcac ctccgcctca cagcgattct accgtgtcct gcatgccgct
2041 gcctctgcgg gcgagcacga gaaggtggtc cagggcttgt ttgacaactt cctgcgtctg
2101 cggctgcgag actccagcct gggtgctgtg tgtgtggccc tcgactggct ggccttcgat
2161 gacctgctgg cgggggctgc tcatcacagc cagagcttcc agctgctgcg ctacccaccc
2221 ttcctgcccg tggccttcca tgtgctgttt gcttccagcc acacacccag gatcaccttc
2281 cccagcagcc agcaggaggc ccagaaccgg atgagccaga tgaggaacct gatccagacg
2341 ctggtgtccg gcatcgcgcc agccacgcgc agccgggcca cgccccaggc cctgctcctc
2401 gatgccctct gcctgctcct ggacattctt gcacccaagc tccgccccgt gagcacacag
2461 ctgtacagca cccgtgaaaa gcaacagctg gccagcctgg tgggcacgat gctcgcttac
2521 agcctgacct accgccagga gcgcacgccc gatggccagt acatctacag gctggagccg
2581 aacgtggagg aactctgccg cttccctgag ctgcctgccc gcaagcccct cacctaccag
2641 acgaagcagc tcatcgcccg cgagatcgag gtggagaaga tgcggcgggc ggaggcttct
2701 gcccgggtag agaacagccc ccaggtggat gggagccccc cagggctcga gggtctgctg
2761 gggggcattg gggagaaagg ggtgcaccga cctgccccac gcaaccatga gcagcggctg
2821 gagcacatca tgaggcgagc ggcccgggag gaacagcctg agaaggactt ctttggacgt
2881 gtggtcgtca ggagcacagc agtcccgagt gcaggggaca cggccccgga gcaggactca
2941 gtggagcggc gcatgggcac agcggtgggc aggagcgagg tctggttccg cttcaacgag
3001 ggtgtctcca acgccgtgcg gcgcagcctg tacatcaggg acttgctcta gttctctgag
3061 ccgcggacat gccctcgcat tgcttcccgc agagtgcaga gacaggaagc tggagatgtc
3121 tttataaagt cacaccttta cagactgtaa aaaaaaaaaa aaaaaa
//