LOCUS BC006404 3131 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli), mRNA
(cDNA clone MGC:13160 IMAGE:4304523), complete cds.
ACCESSION BC006404
VERSION BC006404.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3131)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3131)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC006404.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147523.
FEATURES Location/Qualifiers
source 1..3131
/db_xref="H-InvDB:HIT000032812"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13160 IMAGE:4304523"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3131
/gene="CLPB"
/gene_synonym="FLJ13152"
/gene_synonym="HSP78"
/gene_synonym="SKD3"
/db_xref="GeneID:81570"
/db_xref="HGNC:HGNC:30664"
CDS 51..2174
/gene="CLPB"
/gene_synonym="FLJ13152"
/gene_synonym="HSP78"
/gene_synonym="SKD3"
/codon_start=1
/product="ClpB caseinolytic peptidase B homolog (E. coli)"
/protein_id="AAH06404.1"
/db_xref="GeneID:81570"
/db_xref="HGNC:HGNC:30664"
/translation="MLGSLVLRRKALAPRLLLRLLRSPTLRGHGGASGRNVTTGSLGE
PQWLRVATGGRPGTSPALFSGRGAATGGRQGGRFDTKCLAAATWGRLPGPEETLPGQD
SWNGVPSRAGLGMCALAAALVVHCYSKSPSNKDAALLEAARANNMQEVSRLLSEGADV
NAKHRLGWTALMVAAINRNNSVVQVLLAAGADPNLGDDFSSVYKTAKEQGIHSLEDGG
QDGASRHITNQWTSALEFRRWLGLPAGVLITREDDFNNRLNNRASFKGCTALHYAVLA
DDYRTVKELLDGGANPLQRNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEER
RRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAK
QTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPNAV
VLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQ
LRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIV
YFLPFCHSELIQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKH
EVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKQLLKSPELPSPQAEKRLPKLRLEI
IDKDSKTRRLDIRAPLHPEKVCNTI"
BASE COUNT 769 a 882 c 878 g 602 t
ORIGIN
1 gtggtcagca caggggccgg caccacgggg ttatcgaagc agctgtcaag atgctggggt
61 ccctggtgtt gaggagaaaa gcactggcgc cacggctact cctccggctg ctcaggtccc
121 caacgctccg gggccatgga ggtgcttccg gccggaatgt gactactggg agtctcgggg
181 agccgcagtg gctgagggta gccaccgggg ggcgccctgg aacatcgccg gccttgttct
241 ccggacgtgg ggcagccacc ggggggcgcc agggaggacg cttcgatacc aaatgcctcg
301 cggctgccac ttggggacgc cttcctggtc ccgaagaaac actcccagga caggacagct
361 ggaacggggt ccccagcagg gccggactgg gcatgtgcgc cctggccgca gcgctggtgg
421 ttcattgcta cagcaagagt ccgtccaaca aggatgcagc cctgttggaa gctgcccgtg
481 ccaacaatat gcaagaagtc agcaggctgt tgtcagaagg tgcagatgtc aatgcaaagc
541 acagacttgg ctggacagca ctcatggtgg cagccatcaa ccgaaacaac agtgtggtac
601 aggtcctgct tgctgctggg gctgatccaa accttggaga tgatttcagc agtgtttaca
661 agactgccaa ggaacaggga atccattctt tggaagatgg gggacaggac ggtgcaagcc
721 ggcacatcac aaaccagtgg acaagtgccc tggagttcag gagatggcta ggactccccg
781 ctggcgtcct gatcacccga gaggatgact tcaacaacag gctgaacaac cgcgccagtt
841 tcaagggctg cacggccttg cactatgctg ttcttgctga tgactaccgc actgtcaagg
901 agctgcttga tggaggagcc aaccccctgc agaggaatga aatgggacac acacccttgg
961 attatgcccg agaaggggaa gtgatgaagc ttctgaggac ttctgaagcc aagtaccaag
1021 agaagcagcg gaagcgtgag gctgaggagc ggcgccgctt ccccctggag cagcgactaa
1081 aggagcacat cattggccag gagagcgcca tcgccacagt gggtgctgcg atccggagga
1141 aggagaatgg ctggtacgat gaagaacacc ctctggtctt cctcttcttg ggatcatctg
1201 gaataggaaa aacagagctg gccaagcaga cagccaaata tatgcacaaa gatgctaaaa
1261 agggcttcat caggctggac atgtccgagt tccaggagcg acacgaggtg gccaagttta
1321 ttgggtctcc accaggctac gttggccatg aggagggtgg ccagctgacc aagaagttga
1381 agcagtgccc caatgctgtg gtgctctttg atgaagtaga caaggcccat ccagatgtgc
1441 tcaccatcat gctgcagctg tttgatgagg gccggctgac agatggaaaa gggaagacca
1501 ttgattgcaa ggacgccatc ttcatcatga cctccaatgt ggccagcgac gagatcgcac
1561 agcacgcgct gcagctgagg caggaagctt tggagatgag ccgtaaccgt attgccgaaa
1621 acctggggga tgtccagata agtgacaaga tcaccatctc aaagaacttc aaggagaatg
1681 tgattcgccc tatcctgaaa gctcacttcc ggagggatga gtttctggga cggatcaatg
1741 agatcgtcta cttcctcccc ttctgccact cggagctcat ccaactcgtc aacaaggaac
1801 taaacttctg ggccaagaga gccaagcaaa ggcacaacat cacgctgctc tgggaccgcg
1861 aggtggcaga tgtgctggtc gacggctaca atgtgcacta tggcgcccgc tccatcaaac
1921 atgaggtaga acgccgtgtg gtgaaccagc tggcagcagc ctatgagcag gacctgctgc
1981 cagggggctg tactttgcgc atcacggtgg aggactcaga caagcagcta ctcaaaagcc
2041 cagaactgcc ctcaccccag gctgagaagc gcctccccaa gctgcgtctg gagatcatcg
2101 acaaggacag caagactcgc agactggaca tccgggcacc actgcaccct gagaaggtgt
2161 gcaacaccat ctagcagcca cctgcctgct cctatgtgcc ctcaccatcc aataaaggcc
2221 ccttggctgt ggcatggcaa ctgacttacc ttcccctcat gccgctccca tctctaccca
2281 gtctcaggcc tgcttacctc ctcacagccc atgaagaccc cttctcagcc ccaaaacctg
2341 aaggaggaat ttcgccctac tctggcccct ttgttgtggg cccataacct gctaacaagc
2401 cttcaggaga ggagctgcct ttccaccccc ttcaaggcaa ggagggatgg aggtccctta
2461 tttccttcag aatgatcccc atcccccata gtcgccagac tttctcatgt tcccaggaag
2521 ctcagaagta tggcagctaa gaacacagct ggctggaaga agacagggac cagactgaac
2581 tgccaccctc tgctagtcct catgcaactc agtccccaga atggctccac tgggagtgga
2641 ggaagagctc agaggcccag gtgcagatag ttctgcaatt tagtctgtag cctcctcgtt
2701 ccctacccta aaattctaag gggaagggac ccatagaggc ttgcctgttt ccgctactat
2761 attatgccca gtgttcctcc tcaccccacg tcctggggtc aggccagacc atgtttcgtc
2821 agccttgggg actaggccag tgttgggcac ctccaggagg aggcctgact ggttcattac
2881 cctcccctac tcagactgag cagcagtccc agataaccaa gcaagctcag ctctgtgggg
2941 gcctccttca aaagaccaac atcgcagaca ttaggaagct gtaggaagag agatcatggg
3001 tttgacctct gcccacatgg ccatggagtc agcctcagcc ctgtctgtac tgctcgtcca
3061 gctaaacgag cctggaataa acatgcagtt tattcagtct gcatgttagt cacaaaaaaa
3121 aaaaaaaaaa a
//