LOCUS BC006300 1226 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 170, mRNA (cDNA clone
IMAGE:4080218), complete cds.
ACCESSION BC006300
VERSION BC006300.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1226)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1226)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006300.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: a Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1226
/db_xref="H-InvDB:HIT000032739"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4080218"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1226
/gene="C1orf170"
/gene_synonym="MGC13275"
/gene_synonym="RP11-54O7.8"
/db_xref="GeneID:84808"
/db_xref="HGNC:HGNC:28208"
CDS 65..241
/gene="C1orf170"
/gene_synonym="MGC13275"
/gene_synonym="RP11-54O7.8"
/codon_start=1
/product="C1orf170 protein"
/protein_id="AAH06300.1"
/db_xref="GeneID:84808"
/db_xref="HGNC:HGNC:28208"
/translation="MCLVFVAFATWAVRTSDPHTPDAWKTALLANVGTISAIRYFRRQ
AGQGRRSHSPSPSS"
BASE COUNT 244 a 335 c 435 g 212 t
ORIGIN
1 gtgagcttct gtcctagggg agctccgggg gcctgtccca tcatttgcct tcagccagaa
61 tgacatgtgc ctggtgtttg tagcttttgc cacctgggct gtgaggacgt cagatccgca
121 taccccagac gcctggaaaa cagccttgct ggccaacgtc ggcaccatct ctgccatccg
181 ctacttccgc cggcaggcgg ggcaagggcg ccgcagccac agccccagcc ccagctccta
241 ggagccaggc ccgggccagg gagatgcagg atgaggagac gaccacaggc gcccagggca
301 ggacgaggtg ccgccctcgc ccgggccctc tgacccctct cttctaccgc gtccaggagg
361 ggggcgtgtc ctggtgctgc tccctccgac tcacctgagg atccagccag tgaccacggc
421 cactccccac gcctgggagg gaggtgctaa agtctgggtg ggtggagggc aggcaggtgg
481 ctgggtagga gggtggccag attcacagat gagaacacag ggcattcggt taatttcaga
541 caggcaatag tggggaggtc attttactaa gaagttgttg tttatctgaa atcaaatgca
601 accgcaccct gcgtttcttc tggggtgcag ggggagctga gtggcaggac aggacttgga
661 cctcggaggg gtctgagcag caagacactc cggctggagc tctgggcaga ggcaggggag
721 aggacacagg gtggcctcaa agaggggatg ggcagcctcc tcacaggtgg gctgggctgg
781 caagggctcc aaggcccatc actcttgatc ctcaaaggac tgtggccaag gcctctgcgg
841 gctctggcct gagacagcga aggctctgcc tgcccctccc cagtgcagcg gcccctgcag
901 ggtgggggtc tgtggcagag ccgcgagccc ctccccggga gccctgggtg caggtgcaga
961 gggagaattc ggtggcctca gatggagggc tgggctcctg gggttgtccc gggggctcct
1021 gtggggcagc tggggaccca cagccaagag gagtcagaga tgaggtggga aggtcggtga
1081 ggggcccgag gtggcagagg aagggggctg cctggctggg tgctgggtgg gggtcctcaa
1141 gactgtggga gaccctggct gctgagcaga gaacacatgg atgcagcacc aataaaattc
1201 tatcttttaa aaaaaaaaaa aaaaaa
//