LOCUS BC006211 1899 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stromal cell derived factor 4, mRNA (cDNA clone
MGC:852 IMAGE:3162764), complete cds.
ACCESSION BC006211
VERSION BC006211.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1899)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1899)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC006211.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: e Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18699731.
FEATURES Location/Qualifiers
source 1..1899
/db_xref="H-InvDB:HIT000032672"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:852 IMAGE:3162764"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1899
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
CDS 211..1299
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/codon_start=1
/product="stromal cell derived factor 4"
/protein_id="AAH06211.1"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
/translation="MVWPWVAMASRWGPLIGLAPCCLWLLGAVLLMDASARPANHSST
RERVANREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRK
LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD
EYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTE
EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD
NWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHL
EPEEVLKYSEFFTGSKLVDYARSVHEEF"
BASE COUNT 398 a 590 c 596 g 315 t
ORIGIN
1 cggcgtcact gacgcttcgc tccggtcctc ggatcccgag cgcggggagg cagaccgact
61 gtgagctgct tgtccccatc ctgcggccgt cctggggaca cagagccctc cgtggtgccc
121 ggggattgga ttggagccag gacctcactt cctcctctgc ccctgcccct gcccctccca
181 gcacctggcc cacaccctgc agcccgcccc atggtctggc cctgggtggc gatggcgtcc
241 aggtggggtc ccctcattgg cctggctccg tgctgcctct ggctcctggg ggcagtcctt
301 ctgatggacg cgtctgcacg gcctgccaac cactcgtcca ctcgagagag agtagccaac
361 agggaggaga atgagatcct gcccccagac cacctgaacg gggtgaagct ggagatggac
421 gggcacctca atcgcggctt ccaccaggag gtcttcctag gcaaggacct gggtggcttt
481 gatgaggacg cggagccgcg gcggagccgg aggaagctga tggtcatctt ttccaaggtg
541 gatgtgaaca ctgaccggaa gatcagtgcc aaggagatgc agcgctggat catggagaag
601 acggccgagc acttccagga ggccatggag gagagcaaga cacacttccg cgccgtggac
661 cctgacgggg acggtcacgt gtcttgggac gagtataagg tgaagttttt ggcgagtaaa
721 ggccatagcg agaaggaggt tgccgacgcc atcaggctca acgaggaact caaagtggac
781 gaggaaacac aggaagtcct ggagaacctg aaggaccgct ggtaccaggc ggacagcccc
841 cctgcagacc tgctgctgac ggaggaggag ttcctgtcgt tcctccaccc cgagcacagc
901 cggggaatgc tcaggttcat ggtgaaggag atcgtccggg acctggacca ggacggtgac
961 aagcagctct ctgtgcccga gttcatctcc ctgcccgtgg gcaccgtgga gaaccagcag
1021 ggccaggaca ttgacgacaa ctgggtgaaa gacagaaaaa aggagtttga ggagctcatt
1081 gactccaacc acgacggcat cgtgaccgcc gaggagctgg agagctacat ggaccccatg
1141 aacgagtaca acgcgctgaa cgaggccaag cagatgatcg ccgtcgccga cgagaaccag
1201 aaccaccacc tggagcccga ggaggtgctc aagtacagcg agttcttcac gggcagcaag
1261 ctggtggact acgcgcgcag cgtgcacgag gagttttgag cgcccggccg cgccccgcgc
1321 cgccccccac gcaccaccgg ggcggcctcg cgggtgactc cgggctccgt ggctgtcccg
1381 gaccccacct cttccctgcc gcccgccacc ggccgaccga ccgcggctgc cccagttgat
1441 gagcggcgtg tcccctctgc agcgcgcacc ccggcggggc tttggctgtg acgcggtcgg
1501 ggcgcggggc tgggctgtgg ccccgcggcg ccgcctcctc cctggtccct cgaaatcgtt
1561 gcatctcact tctgagaacg aaatctcgct tcagtcactc tgccgaaggc gctgacggca
1621 tcgcggccgg aacctctggg cccggcccct cccagggccg ccgctccgtg ggaaaaaaca
1681 gctcctccat ttccttgaaa actgaacgat tattaaaaat agattaaact tcgctggaaa
1741 tgagtagcca ggaagttcag gggagggtgc cgggtccttc ccgggcctgg cgtgtcggag
1801 ccacccaggt cccgcagctg ccgctgagaa aatgcaaata tttgttgtga caagaatcac
1861 atacatttac tttaaatata aaaaaaaaaa aaaaaaaaa
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