LOCUS BC006178 1393 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SEC22 vesicle trafficking protein homolog C (S.
cerevisiae), mRNA (cDNA clone MGC:13261 IMAGE:4054516), complete
cds.
ACCESSION BC006178
VERSION BC006178.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1393)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1393)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: p Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536310.
FEATURES Location/Qualifiers
source 1..1393
/db_xref="H-InvDB:HIT000032651"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13261 IMAGE:4054516"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1393
/gene="SEC22C"
/gene_synonym="MGC13261"
/gene_synonym="MGC5373"
/db_xref="GeneID:9117"
/db_xref="HGNC:HGNC:16828"
/db_xref="MIM:604028"
CDS 116..1027
/gene="SEC22C"
/gene_synonym="MGC13261"
/gene_synonym="MGC5373"
/codon_start=1
/product="SEC22 vesicle trafficking protein homolog C (S.
cerevisiae)"
/protein_id="AAH06178.1"
/db_xref="GeneID:9117"
/db_xref="HGNC:HGNC:16828"
/db_xref="MIM:604028"
/translation="MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRL
AQYPGRGSAEGCDFSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTC
IGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV
ANGVMNGHTPMHLEPAPNFRMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAH
EEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQIL
FHIGVAFLSSYQILTRQLQEKQSDCGV"
BASE COUNT 323 a 326 c 344 g 400 t
ORIGIN
1 ggccgagccc tcccggtcgg ctaagattgc tgaggaggcg gcgggtagct ggcaggcgcc
61 gacttccgaa ggccgccgtc cgggcgaggt gtcctcatga cttctcttgt ggaccatgtc
121 cgtgatcttt tttgcctgcg tggtacgggt aagggatgga ctgcccctct cagcctctac
181 tgatttttac cacacccaag attttttgga atggaggaga cggctcaaga gtttagcctt
241 gcgactggcc cagtatccag gtcgaggttc tgcagaaggt tgtgacttta gtatacattt
301 ttcttctttc ggggacgtgg cctgcatggc tatctgctcc tgccagtgtc cagcagccat
361 ggccttctgc ttcctggaga ccctgtggtg ggaattcaca gcttcctatg acactacctg
421 cattggccta gcctccaggc catacgcttt tcttgagttt gacagcatca ttcagaaagt
481 gaagtggcat tttaactatg taagttcctc tcagatggag tgcagcttgg aaaaaattca
541 ggaggagctc aagttgcagc ctccagcggt tctcactctg gaggacacag atgtggcaaa
601 tggggtgatg aatggtcaca caccgatgca cttggagcct gctcctaatt tccgaatgga
661 accagtgaca gccctgggta tcctctccct cattctcaac atcatgtgtg ctgccctgaa
721 tctcattcga ggagttcacc ttgcagaaca ttctttacag gttgcccatg aggaaattgg
781 aaacattctg gcttttcttg ttcctttcgt agcctgcatt ttccagtgtt atttgtacct
841 gttctacagt ccagccagga ctatgaaggt ggtgcttatg ctgctcttta tttgcctggg
901 caacatgtac ctgcacgggc tgaggaacct ctggcaaatc cttttccaca taggagtggc
961 ttttctgtct tcatatcaga tactaacaag gcagcttcag gagaagcagt ctgactgtgg
1021 agtatgagga tgacactgtg atgaatggat tctttgattt tcttttgagg atcaatctat
1081 gtttctcttt ctgcttctct actttacact ccagtttcca tccttttcag ccaactggac
1141 tgaaaaacca ggaattgggg atgttaaaca gttgcagtgg aagtcatgag gttgcttgat
1201 acccagcctt ggttctgtgc caagcattac tgcaggatct ccagccagtt cagcacgttt
1261 acctaggaca gctggatctg ggggctcatc cagaaagagc tttattggaa gagagaaagg
1321 aaatattttg gtcttttaag ttgaatgata cagtaaacca cttgattcaa taacaaaaaa
1381 aaaaaaaaaa aaa
//