LOCUS BC006161 3012 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sphingosine kinase 2, mRNA (cDNA clone MGC:13202 IMAGE:3677636), complete cds. ACCESSION BC006161 VERSION BC006161.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3012) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3012) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis M. Staudt, M.D., Ph.D. cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 18 Row: j Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361698. FEATURES Location/Qualifiers source 1..3012 /db_xref="H-InvDB:HIT000032640" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:13202 IMAGE:3677636" /tissue_type="Lymph, Burkitt lymphoma" /clone_lib="NIH_MGC_8" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3012 /gene="SPHK2" /db_xref="GeneID:56848" /db_xref="HGNC:HGNC:18859" /db_xref="MIM:607092" CDS 367..2331 /gene="SPHK2" /codon_start=1 /product="sphingosine kinase 2" /protein_id="AAH06161.1" /db_xref="GeneID:56848" /db_xref="HGNC:HGNC:18859" /db_xref="MIM:607092" /translation="MNGHLEAEEQQDQRPDQELTGSWGHGPRSTLVRAKAMAPPPPPL AASTPLLHGEFGSYPARGPRFALTLTSQALHIQRLRPKPEARPRGGLVPLAEVSGCCT LRSRSPSDSAAYFCIYTYPRGRRGARRRATRTFRADGAATYEENRAEAQRWATALTCL LRGLPLPGDGEITPDLLPRPPRLLLLVNPFGGRGLAWQWCKNHVLPMISEAGLSFNLI QTERQNHARELVQGLSLSEWDGIVTVSGDGLLHEVLNGLLDRPDWEEAVKMPVGILPC GSGNALAGAVNQHGGFEPALGLDLLLNCSLLLCRGGGHPLDLLSVTLASGSRCFSFLS VAWGFVSDVDIQSERFRALGSARFTLGTVLGLATLHTYRGRLSYLPATVEPASPTPAH SLPRAKSELTLTPDPAPPMAHSPLHRSVSDLPLPLPQPALASPGSPEPLPILSLNGGG PELAGDWGGAGDAPLSPDPLLSSPPGSPKAALHSPVSEGAPVIPPSSGLPLPTPDARV GASTCGPPDHLLPPLGTPLPPDWVTLEGDFVLMLAISPSHLGADLVAAPHARFDDGLV HLCWVRSGISRAALLRLFLAMERGSHFSLGCPQLGYAAARAFRLEPLTPRGVLTVDGE QVEYGPLQAQMHPGIGTLLTGPPGCPGREP" BASE COUNT 522 a 1017 c 934 g 539 t ORIGIN 1 cgactgacta gccgggcgat aacggcagag agcatagagc gcaggaacaa gcgcaacgtc 61 caagagggaa gggccagcac gtcgggggcc tctctggccc tacccaggcc gtgttctcga 121 tagctttccg gaagaaaggg atctgggagc gagatgcgtg tagctagcac gatgcgtcgc 181 gcggtgacgc tctggcccga cgccgacggc ctctcagtgg ctcccggagg acccggcggg 241 cccagtgttg gagagctgaa ggtcaggcca ggacagtgag acctgactcc ttgctcctac 301 cagcctacta tggcttaaga cccagggcca gggtcccgtt gatgtaacag agcagaggac 361 cagcagatga atggacacct tgaagcagag gagcagcagg accagaggcc agaccaggag 421 ctgaccggga gctggggcca cgggcctagg agcaccctgg tcagggctaa ggccatggcc 481 ccgcccccac cgccactggc tgccagcacc ccgctcctcc atggcgagtt tggctcctac 541 ccagcccgag gcccacgctt tgccctcacc cttacatcgc aggccctgca catacagcgg 601 ctgcgcccca aacctgaagc caggccccgg ggtggcctgg tcccgttggc cgaggtctca 661 ggctgctgca ccctgcgaag ccgcagcccc tcagactcag cggcctactt ctgcatctac 721 acctaccctc ggggccggcg cggggcccgg cgcagagcca ctcgcacctt ccgggcagat 781 ggggccgcca cctacgaaga gaaccgtgcc gaggcccagc gctgggccac tgccctcacc 841 tgtctgctcc gaggactgcc actgcccggg gatggggaga tcacccctga cctgctacct 901 cggccgcccc ggttgcttct attggtcaat ccctttgggg gtcggggcct ggcctggcag 961 tggtgtaaga accacgtgct tcccatgatc tctgaagctg ggctgtcctt caacctcatc 1021 cagacagaac gacagaacca cgcccgggag ctggtccagg ggctgagcct gagtgagtgg 1081 gatggcatcg tcacggtctc gggagacggg ctgctccatg aggtgctgaa cgggctccta 1141 gatcgccctg actgggagga agctgtgaag atgcctgtgg gcatcctccc ctgcggctcg 1201 ggcaacgcgc tggccggagc agtgaaccag cacgggggat ttgagccagc cctgggcctc 1261 gacctgttgc tcaactgctc actgttgctg tgccggggtg gtggccaccc actggacctg 1321 ctctccgtga cgctggcctc gggctcccgc tgtttctcct tcctgtctgt ggcctggggc 1381 ttcgtgtcag atgtggatat ccagagcgag cgcttcaggg ccttgggcag tgcccgcttc 1441 acactgggca cggtgctggg cctcgccaca ctgcacacct accgcggacg cctctcctac 1501 ctccccgcca ctgtggaacc tgcctcgccc acccctgccc atagcctgcc tcgtgccaag 1561 tcggagctga ccctaacccc agacccagcc ccgcccatgg cccactcacc cctgcatcgt 1621 tctgtgtctg acctgcctct tcccctgccc cagcctgccc tggcctctcc tggctcgcca 1681 gaacccctgc ccatcctgtc cctcaacggt gggggcccag agctggctgg ggactggggt 1741 ggggctgggg atgctccgct gtccccggac ccactgctgt cttcacctcc tggctctccc 1801 aaggcagctc tacactcacc cgtctccgaa ggggcccccg taattccccc atcctctggg 1861 ctcccacttc ccacccctga tgcccgggta ggggcctcca cctgcggccc gcccgaccac 1921 ctgctgcctc cgctgggcac cccgctgccc ccagactggg tgacgctgga gggggacttt 1981 gtgctcatgt tggccatctc gcccagccac ctaggcgctg acctggtggc agctccgcat 2041 gcgcgcttcg acgacggcct ggtgcacctg tgctgggtgc gtagcggcat ctcgcgggct 2101 gcgctgctgc gccttttctt ggccatggag cgtggtagcc acttcagcct gggctgtccg 2161 cagctgggct acgccgcggc ccgtgccttc cgcctagagc cgctcacacc acgcggcgtg 2221 ctcacagtgg acggggagca ggtggagtat gggccgctac aggcacagat gcaccctggc 2281 atcggtacac tgctcactgg gcctcctggc tgcccggggc gggagccctg aaactaaaca 2341 agcttggtac ccgccggggg cggggcctac attccaatgg ggcggagcct gagctagggg 2401 gtgtggcctg gctgctagag ttgtggtggc aggggccctg gccccgtctc aggattgcgc 2461 tcgctttcat gggaccagac gtgatgctgg aaggtgggcg tcgtcacggt taaagagaaa 2521 tgggctcgtc ccgagggtag tgcctgatca atgagggcgg ggcctggcgt ctgatctggg 2581 gccgccctta cggggcaggg ctcagtcctg acgcttgcca cctgctccta cccggccagg 2641 atggctgagg gcggagtcta ttttacgcgt cgcccaatga caggacctgg aatgtactgg 2701 ctggggtagg cctcagtgag tcggccggtc agggcccgca gcctcgcccc atccactccg 2761 gtgcctccat ttagctggcc aatcagccca ggaggggcag gttccccggg gccggcgcta 2821 ggatttgcac taatgttcct ctccccgcgg gtgggggcgg ggaaattcat atcccctgtt 2881 cgtctcatgc gcgtcctccg tccccaatct aaaaagcaat tgaaaaggtc tatgcaataa 2941 aggcagtcgc ttcattcctc tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3001 aaaaaaaaaa aa //