LOCUS BC006137 3594 bp mRNA linear HUM 25-MAR-2004
DEFINITION Homo sapiens RNA binding motif protein 19, mRNA (cDNA clone
MGC:13068 IMAGE:3677625), complete cds.
ACCESSION BC006137
VERSION BC006137.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3594)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3594)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: j Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..3594
/db_xref="H-InvDB:HIT000032630"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13068 IMAGE:3677625"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3594
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/db_xref="GeneID:9904"
CDS 84..2966
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/codon_start=1
/product="RBM19 protein"
/protein_id="AAH06137.1"
/db_xref="GeneID:9904"
/translation="MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKF
GFIGFKSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQP
PKDSTTPEIKKDEKKKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDAEPSK
GKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKA
GSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSRGAGQEQGMPAGKKRPPE
ARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTG
YIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGEN
EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF
MFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANS
ASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRF
LIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTT
AIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSAAPQKKKLQDTPSEPMEK
DPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFD
TTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHV
VDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFG
ELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV
TLQALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSDSDSEEQTLQL"
misc_feature 90..308
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 966..1175
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 1290..1508
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 1845..2048
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 2274..2504
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 2580..2807
/gene="RBM19"
/gene_synonym="DKFZp586F1023"
/gene_synonym="KIAA0682"
/gene_synonym="NPO"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 977 a 958 c 1051 g 608 t
ORIGIN
1 gcggcgccca gggcggtagc gtgaaacttg gtggaagacg ctgaccagtc gtgttggaat
61 caaaacagcg gggaccctgc gccatgtcgc gactgatcgt gaagaatctc ccgaatggga
121 tgaaggagga gcgtttcagg cagctgtttg ccgccttcgg cacgctgaca gactgcagcc
181 tgaagttcac caaagatggc aagttccgca agtttggttt tattggcttc aagtccgagg
241 aagaggccca gaaggcacag aagcatttca acaagagctt catcgacaca tcccggatca
301 cagtggagtt ctgcaagtca ttcggggacc cggccaaacc cagagcctgg agcaaacatg
361 cccagaaacc aagccagccc aagcagcctc caaaagactc tactactcca gaaattaaga
421 aagatgagaa gaagaaaaag gtggcaggtc aactggagaa gctgaaggag gatacagagt
481 tccaggagtt tctgtcagtt catcagaggc gggcgcaggc agccacttgg gcgaatgatg
541 gcctggatgc tgagccctcg aaagggaaga gcaagccggc cagtgactac ctgaacttcg
601 actccgattc tgggcaggag agtgaggagg agggagccgg ggaggacctg gaagaagagg
661 caagcctcga accaaaggca gctgtgcaga aggagctgtc ggacatggat tacctgaaat
721 ccaagatggt gaaggctggg tcgtcctctt cctcggagga agaggaaagt gaagatgaag
781 ccgtgcactg tgatgaaggg agtgaggccg aggaagagga ttcctccgcc accccagtcc
841 tgcaggaaag agacagcagg ggtgcaggcc aagagcaagg gatgccagct gggaaaaaga
901 gaccaccgga ggccagagcc gagacagaga aaccagcaaa ccagaaggaa cccaccacct
961 gccacaccgt gaagctgcgg ggagccccgt tcaatgtcac agagaaaaat gttatggaat
1021 tcctggcacc cctgaaacca gtggccattc gaattgtgag aaacgctcat gggaataaaa
1081 caggatacat ctttgtggat ttcagcaatg aagaggaagt gaagcaagct ctgaaatgca
1141 accgggagta catgggtggg cgctacatcg aggtgttcag ggaaaagaac gtccccacca
1201 ccaagggtgc accaaagaat accaccaaat cctggcaagg ccggatactc ggggagaacg
1261 aagaggagga ggacctggcc gaatccggaa ggctctttgt acggaacctg ccctacacca
1321 gcaccgagga ggatctggag aagctcttct ccaaatacgg tcccctgtct gagctccact
1381 accccatcga cagcctgacc aagaaaccca agggttttgc attcatcacc ttcatgttcc
1441 ctgagcacgc tgtgaaggcc tactcggagg tggacgggca ggtattccag ggcaggatgc
1501 tccacgtgtt accatctacc atcaagaagg aagccagcga ggatgccagt gccctgggat
1561 cgtcgtccta caagaagaag aaggaggccc aggacaaagc caacagtgcc agctctcaca
1621 actggaacac actattcatg gggccgaatg ccgtggccga tgccatcgca cagaagtaca
1681 acgccaccaa aagtcaagtg tttgaccacg agaccaaggg cagcgtggcc gtgcgcgtgg
1741 ctctggggga aacccagctc gtccaggaag tgcggcgttt tctcatagac aacggggtca
1801 gcctggattc cttcagccag gctgcagcag agcgaagcaa gactgtgatt ctggtcaaga
1861 acctcccggc aggcaccctg gcggccgagc tgcaggagac cttcggccgt tttggcagcc
1921 tgggccgcgt gctgctgcca gagggcggaa ccactgccat cgtggagttc ctggagcccc
1981 tggaggcccg caaggccttc aggcatctgg cctattccaa gttccatcat gtccccctct
2041 atctggagtg ggctccagtt ggcgtcttct ccagcgcagc cccacagaag aaaaagctcc
2101 aagacacacc ttcagaaccc atggaaaagg acccagcaga gccagaaaca gtgcctgatg
2161 gcgaaacccc agaagatgaa aatccaacag aggaaggagc agacaactct tcagcaaaga
2221 tggaagagga ggaggaggaa gaggaagaag aagaagagag cctcccagga tgtactctgt
2281 ttattaagaa tctcaatttt gacacaacag aagagaagct gaaggaagtg ttttcaaaag
2341 tggggacagt gaagagctgc tccatctcca agaagaagaa caaagcagga gtgctccttt
2401 ccatggggtt tggatttgtg gaatacagga agccggagca agcccagaaa gctctcaagc
2461 agctccaggg tcacgtcgtg gacggccaca agctggaagt gaggatctcg gaacgagcca
2521 ctaagccagc cgtgacattg gctcggaaga aacaagttcc cagaaagcag accacctcca
2581 agatcctggt gcggaacatc cccttccagg cccacagccg ggagatccga gagctcttca
2641 gcacctttgg ggagttgaag acggtccgcc tgccaaagaa gatgactggg acaggcacac
2701 acagaggctt cggctttgtg gacttcctca ccaagcagga tgcgaagaga gccttcaacg
2761 ccctgtgtca cagcacccac ttgtacgggc ggaggctggt gctggagtgg gccgactccg
2821 aggtgaccct gcaggccctg cggcggaaga cggccgctca ctttcacgag cccccgaaga
2881 aaaagcggtc tgtggtgttg gacgagatcc tggagcagct ggaaggcagt gacagcgaca
2941 gcgaggagca gacccttcag ctgtgagctg gcaccgagag gggctgctga gctagaattc
3001 ccacctatgt ctttccaagg gactgttcac ggcttgggac ttggtctctg tcctgcccca
3061 tcctcgtcac ttgggaccac gagccctggt tcagtcaccc agggaagcct cccagcggct
3121 catgaagcat cgagctccaa gcccagatgc caagctccct ggctgagctg aatgatgtca
3181 ctcatggtgg acgcgttctg ctcacgggcc cagagccctg tgaaatgcat caaggtcctc
3241 tccgctggcc agcagcatcc ccaggcttct ctcaggcgcc cgtgttcaca ttttctccag
3301 cctgagacgc agcctcccgc ctggaagggc ctgtgccagc accaggcaga gggcaagacg
3361 gagagggcag agcaagaact gcactgcatc tcactgcagt ctgaatctag acatcgccat
3421 tccccgaggt gcgacctcag actaatgaca tcctggctga gcctctgttt ttctctctag
3481 gaaatggggg tgataattgt gcctacctca gatagacagt gccagaatta agtgagtcaa
3541 gccaagtaaa gcccagagaa gattctcatc aaaaaaaaaa aaaaaaaaaa aaaa
//