LOCUS BC006097 1348 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DO beta,
mRNA (cDNA clone MGC:12735 IMAGE:4054784), complete cds.
ACCESSION BC006097
VERSION BC006097.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1348)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1348)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18641377.
FEATURES Location/Qualifiers
source 1..1348
/db_xref="H-InvDB:HIT000032601_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12735 IMAGE:4054784"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1348
/gene="HLA-DOB"
/gene_synonym="DOB"
/db_xref="GeneID:3112"
/db_xref="HGNC:HGNC:4937"
/db_xref="MIM:600629"
CDS 59..880
/gene="HLA-DOB"
/gene_synonym="DOB"
/codon_start=1
/product="major histocompatibility complex, class II, DO
beta"
/protein_id="AAH06097.1"
/db_xref="GeneID:3112"
/db_xref="HGNC:HGNC:4937"
/db_xref="MIM:600629"
/translation="MGSGWVPWVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFT
NGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVD
GVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLN
GQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWRAQS
EYSWRKMLSGIAAFLLGLIFLLVGIVIQLRAQKGYVRTQMSGNEVSRAVLLPQSC"
BASE COUNT 327 a 320 c 338 g 363 t
ORIGIN
1 tgaactcatt ctgaagaggc tgacgatttt actgtctcat ttttttcctt tctccagaat
61 gggttctggg tgggtcccct gggtggtggc tctgctagtg aatctgaccc gactggattc
121 ctccatgact caaggcacag actctccaga agattttgtg attcaggcaa aggctgactg
181 ttacttcacc aacgggacag aaaaggtgca gtttgtggtc agattcatct ttaacttgga
241 ggagtatgta cgtttcgaca gtgatgtggg gatgtttgtg gcattgacca agctggggca
301 gccagatgct gagcagtgga acagccggct ggatctcttg gagaggagca gacaggccgt
361 ggatggggtc tgtagacaca actacaggct gggcgcaccc ttcactgtgg ggagaaaagt
421 gcaaccagag gtgacagtgt acccagagag gaccccactc ctgcaccagc ataatctgct
481 gcactgctct gtgacaggct tctatccagg ggatatcaag atcaagtggt tcctgaatgg
541 gcaggaggag agagctgggg tcatgtccac tggccctatc aggaatggag actggacctt
601 tcagactgtg gtgatgctag aaatgactcc tgaacttgga catgtctaca cctgccttgt
661 cgatcactcc agcctgctga gccctgtttc tgtggagtgg agagctcagt ctgaatattc
721 ttggagaaag atgctgagtg gcattgcagc cttcctactt gggctaatct tccttctggt
781 gggaatcgtc atccagctaa gggctcagaa aggatatgtg aggacgcaga tgtctggtaa
841 tgaggtctca agagctgttc tgctccctca gtcatgctaa ggtcctcact gaagcttctc
901 tctctggagc ctgaagtagt gatgagtagt ctgggccctg ggtgaggtaa aggacattca
961 tgaggtcaat gttctgggaa taactctctt ccctgatcct tggaggagcc cgaactgatt
1021 ctggagctct gtgttctgag atcatgcatc tcccacccat ctgcccttct cccttctacg
1081 tgtacatcat taatccccat tgccaagggc attgtccaga aactcccctg agaccttact
1141 ccttccagcc ccaaatcatt tacttttctg tggtccagcc ctactcctat aagtcatgat
1201 ctccaaagct ttctgtcttc caactgcagt ctccacagtc ttcagaagac aaatgctcag
1261 gtagtcactg tttccttttc actttttaaa aaccttttat tgtcaaataa aatggagata
1321 caaaaaatgt aaaaaaaaaa aaaaaaaa
//