LOCUS BC006088 1640 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens serine incorporator 3, mRNA (cDNA clone MGC:12658
IMAGE:3641108), complete cds.
ACCESSION BC006088
VERSION BC006088.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1640)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1640)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39812087.
FEATURES Location/Qualifiers
source 1..1640
/db_xref="H-InvDB:HIT000032595"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12658 IMAGE:3641108"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1640
/gene="SERINC3"
/gene_synonym="AIGP1"
/gene_synonym="DIFF33"
/gene_synonym="SBBI99"
/gene_synonym="TDE"
/gene_synonym="TMS-1"
/db_xref="GeneID:10955"
/db_xref="HGNC:HGNC:11699"
/db_xref="MIM:607165"
CDS 71..1492
/gene="SERINC3"
/gene_synonym="AIGP1"
/gene_synonym="DIFF33"
/gene_synonym="SBBI99"
/gene_synonym="TDE"
/gene_synonym="TMS-1"
/codon_start=1
/product="serine incorporator 3"
/protein_id="AAH06088.1"
/db_xref="GeneID:10955"
/db_xref="HGNC:HGNC:11699"
/db_xref="MIM:607165"
/translation="MGAVLGVFSLASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAF
ILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRIS
FAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVW
FVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSI
ICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLIT
LYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLD
SDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPRR
AVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSPDAKFQSMTSKWPAVWVKISSS
WVCLLLYVWTLVAPLVLTSRDFS"
BASE COUNT 409 a 413 c 352 g 466 t
ORIGIN
1 cctcagctgg cagttaccac cgtgttagaa agcagcctca ggaccggcca cctccatcac
61 tggcgtcacc atgggggctg tgctgggtgt cttctccctc gccagctggg ttccatgcct
121 ctgcagcggt gcctcatgtt tgctgtgtag ttgctgtcct aacagtaaga attccacggt
181 gactcgcctc atttatgctt tcattctcct cctgagcact gtcgtatcct atatcatgca
241 gagaaaagag atggaaactt acttgaagaa gattcctgga ttttgtgaag ggggatttaa
301 aatccatgag gctgatataa atgcagataa agattgtgat gtgctggttg gttataaagc
361 tgtgtatcgg atcagctttg ccatggccat ctttttcttt gtcttttctc tgctcatgtt
421 caaagtaaaa acaagtaaag atctccgagc ggcagtacac aatgggtttt ggttcttcaa
481 aattgctgcc cttattggaa tcatggttgg ctctttctac atccctgggg gctatttcag
541 ctcagtctgg tttgttgttg gcatgatagg ggccgccctc ttcatcctca ttcagctggt
601 gctgctggta gattttgctc attcttggaa tgaatcatgg gtaaatcgaa tggaagaagg
661 aaacccaagg ttgtggtatg ctgctttact gtctttcaca agcgcctttt atatcctgtc
721 aatcatctgt gtcgggctgc tctatacata ttacaccaaa ccagatggct gcacagaaaa
781 caagttcttc atcagtatta acctgatcct ttgcgttgtg gcttctatta tatcgatcca
841 cccaaaaatt caggaacacc agcctcgctc cggcctcttg cagtcctccc tcatcaccct
901 ctacactatg tacctcacct ggtcagccat gtccaatgaa cctgatcgtt cctgcaatcc
961 caacctgatg agctttatta cacgcataac tgcaccaacc ctggctcctg gaaattcaac
1021 tgctgtggtc cctaccccta ctccaccatc aaagagtggg tctttactgg attcagataa
1081 ttttattgga ctgtttgtct ttgttctctg cctcttgtat tctagcatcc gcacttccac
1141 taatagccaa gtagacaagc tgaccctgtc agggagtgac agcgtcatcc ttggtgatac
1201 aactaccagt ggtgccagtg atgaagaaga tggacagcct cggcgggctg tggacaacga
1261 gaaagaggga gtgcagtata gctactcctt attccacctc atgctctgct tggcttcctt
1321 gtacatcatg atgaccctga ccagctggta cagccctgat gcaaagtttc agagcatgac
1381 cagcaagtgg ccagctgtgt gggtcaagat cagctccagc tgggtctgcc tcctgcttta
1441 cgtctggacc cttgtggctc cacttgtcct caccagtcgg gacttcagct gaacctctga
1501 gtgccaagga caccactgga actcacaaag gtctccttca ccgaaaaccc atataccttt
1561 taagtttgtt tcaactaaaa tattaagtga atgctttgca aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aaaaaaaaac
//