LOCUS BC006000 1040 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens calpain, small subunit 2, mRNA (cDNA clone MGC:14804 IMAGE:4092675), complete cds. ACCESSION BC006000 VERSION BC006000.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1040) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1040) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 21 Row: k Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14161691. FEATURES Location/Qualifiers source 1..1040 /db_xref="H-InvDB:HIT000032582" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:14804 IMAGE:4092675" /tissue_type="Bladder, carcinoma" /clone_lib="NIH_MGC_53" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1040 /gene="CAPNS2" /gene_synonym="MGC12536" /gene_synonym="MGC14804" /db_xref="GeneID:84290" /db_xref="HGNC:HGNC:16371" CDS 86..832 /gene="CAPNS2" /gene_synonym="MGC12536" /gene_synonym="MGC14804" /codon_start=1 /product="calpain, small subunit 2" /protein_id="AAH06000.1" /db_xref="GeneID:84290" /db_xref="HGNC:HGNC:16371" /translation="MFLAKALLEGADRGLGEALGGLFGGGGQRREGGGRNIGGIVGGI VNFISEAAAAQYTPEPPPTQQHFTSVEASESEEVRRFRQQFTQLAGPDMEVGATDLMN ILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQ YDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFISCLVRLDA MFRAFKSLDRDRDGLIQVSIKEWLQLTMYS" BASE COUNT 303 a 209 c 253 g 275 t ORIGIN 1 cacatgtaaa ctacttgaac tccatttcat cttttttcat accatctcta agattgctgc 61 cgcatttgct tgttaaactg aaagcatgtt tcttgcaaag gctctattgg aaggagcaga 121 tcgaggtctt ggagaagctc ttggaggcct ctttggagga ggtggtcaga gaagagaagg 181 aggaggaaga aatattggag ggatagttgg aggaattgtg aattttatca gtgaggctgc 241 agcagctcag tatactccag aaccgcctcc cactcagcag catttcacca gtgtggaggc 301 ctcagaaagt gaggaagtta ggcgatttcg gcaacaattt acacagctgg ctggaccaga 361 catggaggtg ggtgccactg atctgatgaa tattctcaac aaagtccttt ctaagcacaa 421 agatcttaag actgacggtt ttagtcttga cacctgccgg agcattgtgt ctgtcatgga 481 cagtgacacg actggtaagc tgggctttga agaatttaag tatctgtgga acaacatcaa 541 gaaatggcag tgtgtttata agcagtatga cagggaccat tctgggtctc tgggaagttc 601 tcagctgcgg ggagctctgc aggccgcagg cttccagcta aatgaacaac tttaccaaat 661 gattgtccgc cggtatgcta atgaagatgg agatatggat tttaacaatt tcatcagctg 721 cttggtccgc ctggatgcca tgtttcgtgc cttcaagtct ctggatagag atagagatgg 781 cctgattcaa gtgtctatca aagaatggct gcagttgacc atgtattcct gaagtgggaa 841 ctgagaagtc aagatcctcc ctggaggaca ggactgaaaa ccttgccaag ctgtacacag 901 ttgctgatac cctgtgcaac agctctcatt tcctggcaag ctctttcaca accctacata 961 tttctgatca tgtgctgcct tttactgctg aattaaaaca gatatttcat aaaaaaaaaa 1021 aaaaaaaaaa aaaaaaaaaa //