LOCUS BC005834 1962 bp mRNA linear HUM 21-OCT-2003
DEFINITION Homo sapiens interferon regulatory factor 2 binding protein 1, mRNA
(cDNA clone IMAGE:2821841), partial cds.
ACCESSION BC005834
VERSION BC005834.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1962)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1962)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC005834.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: k Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17986282.
FEATURES Location/Qualifiers
source 1..1962
/db_xref="H-InvDB:HIT000086534"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2821841"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1962
/gene="IRF2BP1"
/gene_synonym="DKFZP434M154"
/db_xref="GeneID:26145"
CDS <1..1539
/gene="IRF2BP1"
/gene_synonym="DKFZP434M154"
/codon_start=1
/product="IRF2BP1 protein"
/protein_id="AAH05834.2"
/db_xref="GeneID:26145"
/translation="KHPATKDLAAAAAQGPQLPPPQAQPQPSGTGGGVSGQDRYDRAT
SSGRLPLPSPALEYTLGSRLANGLGREEAVAEGARRALLGSMPGLMPPGLLAAAVSGL
GSRGLTLAPGLSPARPLFGSDFEKEKQQRNADCLAELNEAMRGRAEEWHGRPKAVREQ
LLALSACAPFNVRFKKDHGLVGRVFAFDATARPPGYEFELKLFTEYPCGSGNVYAGVL
AVARQMFHDALREPGKALASSGFKYLEYERRHGSGEWRQLGELLTDGVRSFREPAPAE
ALPQQYPEPAPAALCGPPPRAPSRNLAPTPRRRKASPEPEGEAAGKMTTEEQQQRHWV
APGGPYSAETPGVPSPIAALKNVAEALGHSPKDPGGGGGPVRAGGASPAASSTAQPPT
QHRLVARNGEAEVSPTAGAEAVSGGGSGTGATPGAPLCCTLCRERLEDTHFVQCPSVP
GHKFCFPCSREFIKAQGPAGEVYCPSGDKCPLVGSSVPWAFMQGEIATILAGDIKVKK
ERDP"
BASE COUNT 339 a 678 c 615 g 330 t
ORIGIN
1 aagcacccgg ccaccaagga cctggcggcg gcagccgcac aggggcccca gctgccgccc
61 ccgcaggccc agccccagcc gtcagggacc ggcggcggcg tgtcgggcca ggaccgctat
121 gacagggcca catcatcagg ccgcctcccc ctgccctcgc ccgccctgga gtacactctg
181 gggtcccgcc tggccaatgg gctgggccgt gaggaggccg tggctgaggg ggcgcgaagg
241 gccttgcttg gctccatgcc tggcttgatg ccccctgggc tgctggcagc tgcagtgtct
301 ggcctgggaa gccgaggcct gacgctggca cccggcttga gtcctgcccg tcccctcttc
361 ggctccgatt tcgagaaaga gaagcagcag aggaatgcgg actgtctggc agaactgaac
421 gaggccatgc gaggccgggc agaggaatgg cacgggcgcc ccaaagcagt gcgggaacag
481 ctactggcgc tgtccgcctg cgccccgttc aatgtgcgct tcaagaagga tcacgggctg
541 gtggggcgag tgttcgcctt cgatgctact gcccgtcctc caggatacga gttcgagctg
601 aagctcttca ccgaataccc ctgtggttcc ggcaatgtgt acgccggcgt cctggcagtg
661 gctcgccaga tgttccacga tgctctgcgg gagccgggca aggcactggc ttcttcgggc
721 ttcaagtacc tcgaatatga acgccggcat ggatcaggag aatggcggca gctgggcgag
781 ctgcttaccg acggcgtccg cagcttccgc gagccagctc ccgcggaggc cctgccccag
841 cagtacccag agccggcccc tgcggctctc tgtggcccac ccccgcgagc cccatcccgg
901 aacctggcgc ccacgccgcg ccgtcgcaag gcatcccccg agccggaggg cgaggcggct
961 gggaagatga ccaccgagga gcagcagcaa cggcactggg tggcacccgg cggcccgtac
1021 tccgctgaga cccctggtgt gccctcgccc attgccgccc tgaagaatgt ggccgaagcc
1081 ctgggccact cacccaagga ccctggcgga ggcggggggc ctgtgcgtgc agggggcgcc
1141 agccctgcag cctcctccac ggcccagccg ccaacccagc atcgccttgt ggcccgcaac
1201 ggcgaagcag aagtcagtcc cacagcgggg gccgaagctg tcagcggggg tggcagcggc
1261 actggggcga cccctggggc ccccctgtgc tgtaccctgt gcagggagcg gctagaagac
1321 acccacttcg tccagtgccc ctcggtgccc ggacacaagt tctgctttcc ctgctcccgg
1381 gagttcatca aggcgcaggg cccggccggg gaggtgtact gcccgagcgg agacaagtgc
1441 ccgctggtcg gctcctccgt gccctgggcc ttcatgcagg gcgagatcgc caccatcctt
1501 gctggagaca tcaaagttaa gaaagaacgg gacccctagg ctaccactgc ctccaggcta
1561 ctgccctctg cccctttgcc acccaccgct gccgcggata aattattccc tccccgaccc
1621 agcccagtgc cacctctatc tgtgtacata ctcccttctt ccacccagat gggtcccctg
1681 gggtagatgc attgtgggtg gggggagaaa gcttgtggct cctgtccgag ggggtgtttg
1741 gggtcccttg gcccctccag tttccctctg tcctccttgg cttggctttg ctgctgcttg
1801 tagttggggg agaggtgccc ccctcctcct tgagaaggga cctcctgaaa actcgctctt
1861 tataaacgag gcaaaagcat ttaattccca cccccccacc ccccgctccc ttctgctcct
1921 tcaataaacc gaaagatggg ttaaaaaaaa aaaaaaaaaa aa
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