LOCUS BC005810 1373 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens C-type lectin domain family 11, member A, mRNA (cDNA
clone MGC:10378 IMAGE:3830506), complete cds.
ACCESSION BC005810
VERSION BC005810.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1373)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC005810.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37595568.
FEATURES Location/Qualifiers
source 1..1373
/db_xref="H-InvDB:HIT000032453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10378 IMAGE:3830506"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1373
/gene="CLEC11A"
/gene_synonym="CLECSF3"
/gene_synonym="LSLCL"
/gene_synonym="P47"
/db_xref="GeneID:6320"
/db_xref="HGNC:HGNC:10576"
/db_xref="MIM:604713"
CDS 143..1114
/gene="CLEC11A"
/gene_synonym="CLECSF3"
/gene_synonym="LSLCL"
/gene_synonym="P47"
/codon_start=1
/product="C-type lectin domain family 11, member A"
/protein_id="AAH05810.1"
/db_xref="GeneID:6320"
/db_xref="HGNC:HGNC:10576"
/db_xref="MIM:604713"
/translation="MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEERERE
ALMLKHLQEALGLPAGRGDENPAGTVEGKEDWEMEEDQGEEEEEEATPTPSSGPSPSP
TPEDIVTYILGRLAGLDAGLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQAL
QEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQ
QMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQP
SASPHPLSPDQPNGGTLENCVAQASDDGSWWDHDCQRRLYYVCEFPF"
BASE COUNT 239 a 456 c 467 g 211 t
ORIGIN
1 gaagagagaa gctgggagaa tcgggaacct gggggctagt gacctgcaca cagggcaggg
61 gcactcggca gttcccagag gccacccctc ccaccccaga catccagaca tctggaactt
121 tgggtgccaa gagtccagct taatgcaggc agcctggctt ttgggggctt tggtggtccc
181 ccagctcttg ggctttggcc atggggctcg gggagcagag agggagtggg agggaggctg
241 gggaggtgcc caggaggagg agcgggagag ggaggccctg atgctgaagc atctgcagga
301 agccctagga ctgcctgctg ggagggggga tgagaatcct gccggaactg ttgagggaaa
361 agaggactgg gagatggagg aggaccaggg ggaggaagag gaggaggaag caacgccaac
421 cccatcctcc ggccccagcc cctctcccac ccctgaggac atcgtcactt acatcctggg
481 ccgcctggcc ggcctggacg caggcctgca ccagctgcac gtccgtctgc acgcgttgga
541 cacccgcgtg gtcgagctga cccaggggct gcggcagctg cggaacgcgg caggcgacac
601 ccgcgatgcc gtgcaagccc tgcaggaggc gcagggtcgc gccgagcgcg agcacggccg
661 cttggagggc tgcctgaagg ggctgcgcct gggccacaag tgcttcctgc tctcgcgcga
721 cttcgaagct caggcggcgg cgcaggcgcg gtgcacggcg cggggcggga gcctggcgca
781 gccggcagac cgccagcaga tggaggcgct cactcggtac ctgcgcgcgg cgctcgctcc
841 ctacaactgg cccgtgtggc tgggcgtgca cgatcggcgc gccgagggcc tctacctctt
901 cgaaaacggc cagcgcgtgt ccttcttcgc ctggcatcgc tcaccccgcc ccgagctcgg
961 cgcccagccc agcgcctcgc cgcatccgct cagcccggac cagcccaacg gtggcacgct
1021 cgagaactgc gtggcgcagg cctctgacga cggctcctgg tgggaccacg actgccagcg
1081 gcgtctctac tacgtctgcg agttcccctt ctagcggggc cggtaccccg cctccttgcc
1141 catcccacca cccggccttt ccctgcgccg tgcccaccct cctccggaat cgcccttccc
1201 ttcctggcca cgaatggcag cgtcctcccc gacccccagt ctgggcgctt ctgggagggc
1261 tcttgcggtg ccggcactcc tccttgttag tgtctttcct tgaaggggcg ggcaccaggc
1321 taggtccggt gccaataaat ccttgtggaa tctgaaaaaa aaaaaaaaaa aaa
//