LOCUS BC005404 2952 bp mRNA linear HUM 08-OCT-2003 DEFINITION Homo sapiens Sec23 homolog B (S. cerevisiae), mRNA (cDNA clone MGC:5020 IMAGE:3460841), complete cds. ACCESSION BC005404 VERSION BC005404.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2952) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2952) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 4 Row: b Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16905502. FEATURES Location/Qualifiers source 1..2952 /db_xref="H-InvDB:HIT000032444" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5020 IMAGE:3460841" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2952 /gene="SEC23B" /db_xref="GeneID:10483" CDS 251..2554 /gene="SEC23B" /codon_start=1 /product="SEC23B protein" /protein_id="AAH05404.1" /db_xref="GeneID:10483" /translation="MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTP LKERPDLPPVQYEPVLCSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGIS EVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPP DALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARP AQPQEHPFASSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGL LEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYE MLANRTAANGHCIDIYACALDQTGLLEMKCCANLTGGYVVMGDSFNTSLFKQTFQRIF TKDFNGDFRMAFGATLDVKTSRELKIAGAIGPCVSLNVKGLCVSENELGVGGTSQWKI CGLDPTSTLGIYFEVVNQHNTPIPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADV QSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKED PTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPI LYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYEN FKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQET GAPILTDDVSLQVFMDHLKKLAVSSAC" misc_feature 266..2542 /gene="SEC23B" /note="Sec23_Sec24; Region: Sec23/Sec24 family. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. The three-dimensional reconstruction of Sec23p/24p reveals that it has a bone-shaped structure, (17 nm in length), composed of two similar globular domains, one corresponding to Sec23p and the other to Sec24p" /db_xref="CDD:pfam04105" BASE COUNT 782 a 668 c 690 g 812 t ORIGIN 1 gcttctggga ggaggccttt tcttgacagt ttagggtagc gggggaatcg atgatccggg 61 agtcccctgc ggatgtcgtc ccgcaccagg ccgggaccga tttctggctc cagtttcccc 121 agaattgcgg actgcgcaca cctggaagga cccaagtccc gttttatagt tgagaaactc 181 aagactcaga caagtgaaac gacttttgct tcatgacagc tggaactgga acccagttcc 241 cttttagact atggcgacat acctggagtt catccagcag aatgaagaac gggatggtgt 301 gcgttttagt tggaacgtgt ggccttccag ccggctggag gctacaagaa tggttgtacc 361 cctggcttgt ctccttactc ctttgaaaga acgtccagac ctacctcctg tacaatatga 421 acctgtgctt tgcagcaggc caacttgtaa agctgttctc aacccacttt gtcaggttga 481 ttatcgagca aaactttggg cctgtaattt ctgttttcaa agaaatcagt ttcctccagc 541 ttatggaggc atatctgagg tgaatcaacc tgccgaattg atgccccagt tttctacaat 601 tgagtacgtg atacagcgag gtgctcagtc ccctctgatc tttctctatg tggttgacac 661 atgcctggag gaagatgacc ttcaagcact caaagagtcc ctgcagatgt ccctgagtct 721 tcttcctcca gatgctctgg tgggtctgat cacatttgga aggatggtgc aggttcatga 781 gctaagctgt gaaggaatct ccaaaagtta tgtcttccga gggaccaagg atttaactgc 841 aaagcaaata caggatatgt tgggcctgac caagccagcc atgcccatgc agcaagcacg 901 acctgcacaa ccacaggagc acccttttgc ttcaagcaga tttctgcagc ctgttcacaa 961 gattgatatg aacctcactg atcttcttgg ggagctacag agggacccat ggccagtaac 1021 tcaggggaag agacctttgc gatccactgg tgtggctttg tccattgctg ttggcttgct 1081 ggagggcact tttccaaaca caggagccag gatcatgctg tttactggag gtccccctac 1141 ccaagggcct ggcatggtgg ttggagatga attaaagatt cctattcgtt cttggcatga 1201 tattgagaaa gataatgcac gattcatgaa aaaggcaacc aagcactatg agatgcttgc 1261 taatcgaaca gctgcaaatg gtcactgcat tgatatttat gcttgtgccc ttgatcaaac 1321 tggacttttg gagatgaagt gttgtgcaaa tcttactgga ggctacgtgg taatgggaga 1381 ttctttcaac acttctctct tcaagcagac attccaaaga atctttacta aagattttaa 1441 tggagatttc cgaatggcat ttggtgctac tttggacgta aagacctctc gggaactgaa 1501 gattgcagga gccattggtc catgcgtatc tctgaatgtg aaaggactgt gtgtgtcaga 1561 aaatgagctt ggtgttggtg gcacgagtca gtggaaaatc tgtggcctag atcctacatc 1621 tacacttggc atctattttg aagttgtcaa tcagcacaac accccgatcc cccaaggagg 1681 cagaggagcc atccagtttg tcacgcatta tcagcactcc agcacccaga gacgcatccg 1741 cgtgaccacc atcgcccgaa attgggcaga tgtacagagt cagctcaggc acatagaagc 1801 agcatttgac caggaggctg cggcagtgtt gatggcacgg cttggggtgt tccgagcgga 1861 gtcagaggag gggcccgatg tgctccggtg gctggaccga caactcatcc gactgtgtca 1921 aaagtttgga cagtataaca aagaagaccc cacttctttt aggttatcag attccttttc 1981 tctatatcct cagtttatgt tccatctgag aagatctcca tttcttcaag tgtttaacaa 2041 cagtcctgat gagtcgtcat attacagaca tcattttgcc cggcaggacc tgacccagtc 2101 cctcatcatg atccagccca ttctctactc ttactccttt catgggccac cagagccagt 2161 actcttggat agcagcagca ttctagctga cagaattttg ctgatggata ctttctttca 2221 aattgtcatt tatcttggtg agaccatagc ccagtggcgt aaagctggct accaggacat 2281 gcccgagtat gaaaacttca agcaccttct gcaggcacca ctggatgatg ctcaagaaat 2341 tctgcaagca cgcttcccga tgccacgtta catcaacacg gagcatggag gcagtcaggc 2401 tcgattcctt ttgtccaaag tgaacccatc tcagacacac aataacctgt atgcttgggg 2461 acaggaaact ggagcaccca tcctaactga tgatgttagc ctgcaggtgt tcatggacca 2521 tttgaagaag ctggctgtct ccagtgcctg ttaagctgag gatacaacca ggaaatgcaa 2581 cggtgtcaga ttgtgttcaa aatgtctaga aaggcttgat aacattcctg ttacttttct 2641 agcagatttt aacaaataat caaggacatt ttatatgtaa ctctttagat tataatttat 2701 ttgtattcct gtctttgtcc tttttcttgc actataaaat tataaggtca taaatgtttt 2761 ggtacttgta gatgtttatg tgctttttgt atcctaactt ttagaatcta aataaaatca 2821 gaggtaatgt attttggcag cttgtttagg tgagaatctt aatgatcata aaaggaaata 2881 aatctagatg cagaaagtac tggctaaaat attgctaata caaatgtgat ttcctgaaaa 2941 aaaaaaaaaa aa //