LOCUS BC005325 1250 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synovial sarcoma, X breakpoint 4, mRNA (cDNA clone
MGC:12411 IMAGE:3961688), complete cds.
ACCESSION BC005325
VERSION BC005325.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1250)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1250)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: m Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28559012.
FEATURES Location/Qualifiers
source 1..1250
/db_xref="H-InvDB:HIT000032379_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12411 IMAGE:3961688"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1250
/gene="SSX4"
/gene_synonym="MGC12411"
/db_xref="GeneID:6759"
/db_xref="HGNC:HGNC:11338"
/db_xref="MIM:300326"
CDS 59..625
/gene="SSX4"
/gene_synonym="MGC12411"
/codon_start=1
/product="synovial sarcoma, X breakpoint 4"
/protein_id="AAH05325.1"
/db_xref="GeneID:6759"
/db_xref="HGNC:HGNC:11338"
/db_xref="MIM:300326"
/translation="MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSE
KIVYVYMKLNYEVMTKLGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFG
SLQRIFPKIMPKKPAEEENGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRG
KHAWTHRLRERKQLVVYEEISDPEEDDE"
BASE COUNT 371 a 305 c 278 g 296 t
ORIGIN
1 acacgccgat ttgccctttt gattcttcca caatcagggt gagactgctc ccagtgccat
61 gaacggagac gacgcctttg caaggagacc cagggatgat gctcaaatat cagagaagtt
121 acgaaaggcc ttcgatgata ttgccaaata cttctctaag aaagagtggg aaaagatgaa
181 atcctcggag aaaatcgtct atgtgtatat gaagctaaac tatgaggtca tgactaaact
241 aggtttcaag gtcaccctcc cacctttcat gcgtagtaaa cgggctgcag acttccacgg
301 gaatgatttt ggtaacgatc gaaaccacag gaatcaggtt gaacgtcctc agatgacttt
361 cggcagcctc cagagaatct tcccgaagat catgcccaag aagccagcag aggaagaaaa
421 tggtttgaag gaagtgccag aggcatctgg cccacaaaat gatgggaaac agctgtgccc
481 cccgggaaat ccaagtacct tggagaagat caacaagaca tctggaccca aaagggggaa
541 acatgcctgg acccacagac tgcgtgagag aaagcagctg gtggtttatg aagagatcag
601 cgaccctgag gaagatgacg agtaactccc ctcggggata tgacacatgc ccatgatgag
661 aagcagaacg tggtgacctt tcacgaacat gggcatggct gcggacccct cgtcatcagg
721 tgcatagcaa gtgaaagcaa gtgttcacaa cagtgaaaag ttgagcgtca tttttcttag
781 tgtgccaaga gttcgatgtt ggcgtttccg ctgtattttc ttgcagtgtg ccattctgtt
841 agacattagc gttttcgctg atgagcaaga catgcttaat gcatatttcg gcttgtgtat
901 ccatgcacct acctcagaaa acaagtattg tcaggtattc tctccataga acagcactac
961 cctcctctct ccccagatgt gactactgag gggaggtctg agtgtttaat ttccgatttt
1021 ttcctctgca tttacacaca caccacacac gcacacacac acaccaagta ccagtataag
1081 catctcccat ctgcttttct ccattgccat gcgtcctggt caagcccccc tcactctgtt
1141 tcctgttcag catgtactcc cctcatccga ttccgttgta tcagtcactg acagttaata
1201 aacctttgca aacgttcaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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