LOCUS BC005312 1201 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 4,
mRNA (cDNA clone MGC:12387 IMAGE:3933019), complete cds.
ACCESSION BC005312
VERSION BC005312.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1201)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1201)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: d Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52630343.
FEATURES Location/Qualifiers
source 1..1201
/db_xref="H-InvDB:HIT000032366_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12387 IMAGE:3933019"
/tissue_type="Brain"
/clone_lib="NIH_MGC_73"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1201
/gene="HLA-DRB4"
/gene_synonym="DRB4"
/gene_synonym="HLA DRB1"
/db_xref="GeneID:3126"
/db_xref="HGNC:HGNC:4952"
CDS 64..864
/gene="HLA-DRB4"
/gene_synonym="DRB4"
/gene_synonym="HLA DRB1"
/codon_start=1
/product="major histocompatibility complex, class II, DR
beta 4"
/protein_id="AAH05312.1"
/db_xref="GeneID:3126"
/db_xref="HGNC:HGNC:4952"
/translation="MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCEC
HFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRA
EVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRW
FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWS
ARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS"
BASE COUNT 284 a 310 c 323 g 284 t
ORIGIN
1 atagttctcc ctgattgaga cttgcctgct gctgtgacca ctggtcttgt cctcttctcc
61 agcatggtgt gtctgaagct ccctggaggc tcctgtatgg cagcgctgac agtgacattg
121 acggtgctga gctccccact ggctttggct ggggacaccc aaccacgttt cttggagcag
181 gctaagtgtg agtgtcattt cctcaatggg acggagcgag tgtggaacct gatcagatac
241 atctataacc aagaggagta cgcgcgctac aacagtgacc tgggggagta ccaggcggtg
301 acggagctgg ggcggcctga cgctgagtac tggaacagcc agaaggacct cctggagcgg
361 aggcgggccg aggtggacac ctactgcaga tacaactacg gggttgtgga gagcttcaca
421 gtgcagcggc gagtccaacc taaggtgact gtgtatcctt caaagaccca gcccctgcag
481 caccacaacc tcctggtctg ctctgtgaat ggtttctatc caggcagcat tgaagtcagg
541 tggttccgga acggccagga agagaaggct ggggtggtgt ccacaggcct gatccagaat
601 ggagactgga ccttccagac cctggtgatg ctggaaacag ttcctcggag tggagaggtt
661 tacacctgcc aagtggagca tccaagcatg atgagccctc tcacggtgca atggagtgca
721 cggtctgaat ctgcacagag caagatgctg agtggagtcg ggggctttgt gctgggcctg
781 ctcttccttg ggacagggct gttcatctac ttcaggaatc agaaaggaca ctctggactt
841 cagccaacag gactcttgag ctgaagtgca gatgaccaca ttcaaggaag aaccttctgc
901 cccagctttg caagatgaaa agctttccca cttggctctt attcttccac aagagctttg
961 tcaggaccag gttgttactg gttcagcaac tctgcagaaa atgtcctccc ttgtggcttc
1021 cttagctcct gttcttggcc tgaagcctca cagctttgat ggcagtgcct catcttcaac
1081 ttttgtgctt ccctttacct aaactgtcct gcctcccgtg catctgtact ccccttgtgc
1141 cacacattgc attattaaat gtttctcaaa caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 a
//