LOCUS BC005294 1299 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens 15 kDa selenoprotein, mRNA (cDNA clone MGC:12358
IMAGE:4041321), complete cds.
ACCESSION BC005294
VERSION BC005294.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1299)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1299)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: b Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42741647.
FEATURES Location/Qualifiers
source 1..1299
/db_xref="H-InvDB:HIT000032352"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12358 IMAGE:4041321"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_58"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1299
/gene="SEP15"
/db_xref="GeneID:9403"
/db_xref="MIM:606254"
CDS 22..519
/gene="SEP15"
/codon_start=1
/transl_except=(pos:307..309,aa:Sec)
/product="15 kDa selenoprotein"
/protein_id="AAH05294.3"
/db_xref="GeneID:9403"
/db_xref="MIM:606254"
/translation="MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACREL
GFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFP
QVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSE
KLERI"
BASE COUNT 419 a 223 c 264 g 393 t
ORIGIN
1 gcagccagaa acctgcggaa aatggtagcg atggcggctg ggccgagtgg gtgtctggtg
61 ccggcgtttg ggctacggtt gttgttggcg actgtgcttc aagcggtgtc tgcttttggg
121 gcagagtttt catcggaggc atgcagagag ttaggctttt ctagcaactt gctttgcagc
181 tcttgtgatc ttctcggaca gttcaacctg cttcagctgg atcctgattg cagaggatgc
241 tgtcaggagg aagcacaatt tgaaaccaaa aagctgtatg caggagctat tcttgaagtt
301 tgtggatgaa aattgggaag gttccctcaa gtccaagctt ttgttaggag tgataaaccc
361 aaactgttca gaggactgca aatcaagtat gtccgtggtt cagaccctgt attaaagctt
421 ttggacgaca atgggaacat tgctgaagaa ctgagcattc tcaaatggaa cacagacagt
481 gtagaagaat tcctgagtga aaagttggaa cgcatataaa tcttgcttaa attttgtcct
541 atccttttgt taccttatca aatgaaatat tacagcacct agaaaataat ttagttttgc
601 ttgcttccat tgatcagtct tttacttgag gcattaaata tctaattaaa tcgtgaaatg
661 gcagtatagt ccatgatatc taaggagttg gcaagcttaa caaaacccat tttttataaa
721 tgtccatcct cctgcatttg ttgataccac taacaaaatg ctttgtaaca gacttgcggt
781 taattatgca aatgatagtt tgtgataatt ggtccagttt tacgaacaac agatttttaa
841 attagagagg ttaacaagac agatgattac tatgcctcat gtgctgtgtg ctctttgaaa
901 ggaatgacag cagactacaa agcaaataag atatactgag cctcaacaga ttgcctgctc
961 ctcagagtct ctcctatttt tgtattaccc agctttcttt ttaatacaaa tgttatttat
1021 agtttacaat gaatgcactg cataaaaact ttgtagcttc attattgtaa aacatattca
1081 agatcctaca gtaagagtga aacattcaca aagatttgcg ttaatgaaga ctacacagaa
1141 aacctttcta aggatttgtg tggatcagat acatacttgg caaatttttg agttttacat
1201 tcttacagaa aagtccattt aaaagtgatc atttgtaaga ccaaaatata aataaaaagt
1261 ttcaaaaacc aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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