LOCUS BC005142 2646 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens adaptor-related protein complex 3, delta 1 subunit,
mRNA (cDNA clone IMAGE:3506171), partial cds.
ACCESSION BC005142
VERSION BC005142.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2646)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2646)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC005142.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: b Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127437.
FEATURES Location/Qualifiers
source 1..2646
/db_xref="H-InvDB:HIT000086468"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3506171"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>2646
/gene="AP3D1"
/gene_synonym="ADTD"
/db_xref="GeneID:8943"
/db_xref="MIM:607246"
CDS 52..>2646
/gene="AP3D1"
/gene_synonym="ADTD"
/codon_start=1
/product="AP3D1 protein"
/protein_id="AAH05142.1"
/db_xref="GeneID:8943"
/db_xref="MIM:607246"
/translation="MALKMVKGSIDRMFDKNLQDLVRGIRNHKEDEAKYISQCIDEIK
QELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSF
HEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKP
YIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNY
LSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLL
YECVNTVIAVLISLSSGMPNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTH
PKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTY
RDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAIRVKA
IRKFAVSQMSALLDSAHLLASSTQRNGICEVLYAAAWICGEFSEHLQEPHHTLEAMLR
PRVTTLPGHIQAVYVQNVVKLYASILQQKEQAREAEGAQAVTQLMVDRLPQFVQSADL
EVQERASCILQLVKHIQKLQAKDVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLD
AWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFY
IKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQKLEKD
KRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEMPENALPSDEDDKDPNDP
YRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKKKKKKKKKK
KKKKKKKKK"
misc_feature 142..1794
/gene="AP3D1"
/gene_synonym="ADTD"
/note="Adaptin_N; Region: Adaptin N terminal region. This
family consists of the N terminal region of various alpha,
beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes are
involved in the formation of clathrin-coated pits and
vesicles. The N-terminal region of the various adaptor
proteins (APs) is constant by comparison to the C-terminal
which is variable within members of the AP-2 family"
/db_xref="CDD:pfam01602"
BASE COUNT 687 a 784 c 743 g 432 t
ORIGIN
1 cacggcgccc agccgcgggc ctcccgaggc aaaagcccgt gggccgccgc gatggccctc
61 aagatggtga agggcagcat cgaccgcatg ttcgacaaga atctgcagga cttggtccgc
121 ggcatccgta accacaagga ggacgaggca aaatacatat ctcagtgcat tgatgagatc
181 aagcaggagc tgaagcagga caacatagcg gtgaaggcga acgcggtctg caagctgacg
241 tatttacaga tgttgggata cgacatcagc tgggccgcct tcaacatcat agaagtgatg
301 agtgcctcca agttcacctt caagcgaatt ggctacctcg ctgcttccca gagctttcac
361 gaaggcaccg acgtcatcat gctgaccacc aatcagatcc gtaaggactt gagcagcccc
421 agccagtacg acacaggtgt tgcactgacg ggtctgtcct gcttcgtcac cccagacctt
481 gccagagacc tggcaaatga catcatgaca ctgatgtcac acaccaagcc ctacatcagg
541 aagaaggctg tgctgatcat gtacaaggtg ttcctgaagt accccgagtc gctgcgccct
601 gcctttcccc ggctgaagga gaagctggag gaccccgacc ccggggttca gtcggctgcc
661 gtcaatgtca tctgcgagct ggccagacgc aaccctaaga actacctgtc cctggccccg
721 ctctttttca agctgatgac gtcctccacc aacaactggg tcctcatcaa gatcatcaag
781 ctgttcggtg ctcttactcc tttggaaccg cggctgggca agaagctgat cgagcccctc
841 accaatctca tccacagcac gtctgccatg tctctcctct atgaatgtgt gaacaccgtg
901 attgcagtgc tcatctcgct gtcctccggc atgcccaacc acagcgccag catccagctt
961 tgtgttcaga aattaaggat attgatcgag gactccgatc agaacttgaa gtacctgggg
1021 ctgctggcaa tgtccaagat cctgaagacc caccccaagt ccgtgcagtc ccacaaggac
1081 ctcatcctgc agtgcctgga cgacaaggac gagtccatcc ggctgcgggc cctggacctg
1141 ctctatggga tggtgtccaa gaagaacctg atggagatcg tgaagaagct gatgacccac
1201 gtagacaagg cagagggtac cacctaccgt gacgagctgc tcaccaagat cattgacatc
1261 tgcagccagt ccaactacca gtacatcacc aacttcgagt ggtacatcag catcctggtg
1321 gagctgaccc ggctggaggg cacacggcac ggccacctca tcgccgccca aatgctggac
1381 gtggccatcc gcgtgaaggc catccgcaag ttcgccgtgt cccagatgtc tgcgctgctt
1441 gacagtgcac acctgctggc cagcagcacc cagcggaacg ggatctgtga ggtgctgtac
1501 gctgccgcct ggatctgcgg ggagttctca gagcatctgc aggaaccaca ccacactttg
1561 gaggccatgc tgcggcccag agtcaccacg ctgccaggcc acatccaggc cgtgtatgtg
1621 cagaacgtgg tcaagctcta cgcctccatc ctgcagcaga aggagcaggc cagggaggca
1681 gagggcgctc aggccgtcac ccagctcatg gtggaccggc tgccccagtt tgtgcagagc
1741 gcagacctgg aggtgcagga gcgggcgtcc tgcatcctgc agctggtcaa gcacatccag
1801 aagcttcagg ccaaggacgt gcctgtggca gaggaggtca gcgctctctt tgctggggag
1861 ctgaacccag tggcccccaa ggcccagaag aaggttccag tccccgaagg cctggacctg
1921 gacgcctgga tcaatgagcc actctcggac agcgagtcag aggacgagag gcccagggcc
1981 gtcttccacg aggaggagca gcggcgcccc aagcaccggc cgtcggaggc ggacgaggaa
2041 gagctggctc ggcgccgaga ggcccggaag caggagcagg ccaacaaccc cttctacatc
2101 aagagctcgc catcgccaca gaagcggtac caggacaccc cgggcgtgga gcacattccc
2161 gtggtgcaga ttgacctctc cgtccccttg aaggttccag ggctgcctat gtcagatcag
2221 tatgtgaagc tggaggagga gcggcggcac cggcagaagc tggagaagga caagaggagg
2281 aaaaagagga aggagaagga gaagaagggc aagcgccgcc acagctcgct gcccacggag
2341 agcgacgagg acatcgcccc tgcccagcag gtggacatcg tcacagagga gatgcctgag
2401 aatgctctgc ccagcgacga ggatgacaaa gaccccaacg acccctacag ggctctggat
2461 attgacctgg ataagccctt agccgacagc gagaaactgc ctattcagaa acacagaaac
2521 accgagacct caaaatcccc tgagaaggac gttcccatgg tagaaaagaa gagcaagaaa
2581 cccaagaaga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2641 aaaaaa
//