LOCUS BC005124 2320 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D3, mRNA (cDNA clone MGC:10470
IMAGE:3936607), complete cds.
ACCESSION BC005124
VERSION BC005124.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2320)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2320)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC005124.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: f Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23510372.
FEATURES Location/Qualifiers
source 1..2320
/db_xref="H-InvDB:HIT000032228_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10470 IMAGE:3936607"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2320
/gene="HOXD3"
/gene_synonym="Hox-4.1"
/gene_synonym="MGC10470"
/db_xref="GeneID:3232"
/db_xref="HGNC:HGNC:5137"
/db_xref="MIM:142980"
CDS 178..1476
/gene="HOXD3"
/gene_synonym="Hox-4.1"
/gene_synonym="MGC10470"
/codon_start=1
/product="homeobox D3"
/protein_id="AAH05124.1"
/db_xref="GeneID:3232"
/db_xref="HGNC:HGNC:5137"
/db_xref="MIM:142980"
/translation="MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYS
TPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGG
GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQI
FPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY
LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGA
AGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
EPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCA
AQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL"
BASE COUNT 545 a 724 c 602 g 449 t
ORIGIN
1 gcctccacag atatcaaaag aaacctgaag agcctacaaa aaaaaaaaga gataaagaca
61 aaattcaaga aaacacacac atacataatt gtggtcacct ggagcctggg ggccggccca
121 gctctctcag gattcagcag acattggagg tggcagtgaa ggatacagtg gtagtcaatg
181 ttatttgagc agggtcagca ggccctggag cttcctgagt gcacaatgca gaaggctgct
241 tactatgaaa acccaggact gtttggaggc tatggctaca gcaaaactac ggacacttac
301 ggctacagca ccccccacca gccctaccca ccccctgctg ctgccagctc cctggacact
361 gactatccag gttctgcctg ctccatccag agctctgccc ctctgagagc cccagcccac
421 aaaggagctg aactcaatgg cagctgcatg cggccgggca ctgggaacag ccagggtggg
481 ggtggtggca gccagcctcc tggtctgaac tcagagcagc agccaccaca accccctcct
541 ccaccaccga ccctgccccc atcttcaccc accaatcctg gaggtggagt gcctgccaag
601 aagcccaaag gtgggcccaa tgcttctagc tcctcagcca ccatcagcaa gcagatcttc
661 ccctggatga aagagtctcg acagaactcc aagcagaaga acagctgtgc cactgcagga
721 gagagctgcg aggacaagag cccgccaggc ccagcatcca agcgggtacg cacggcatac
781 acgagcgcgc agctggtgga attggaaaag gaattccact tcaaccgcta cttgtgccgg
841 ccgcgccgcg tggagatggc caacctgctg aatctcacgg aacgccagat caagatctgg
901 ttccagaacc ggcgcatgaa gtacaagaag gaccagaagg ccaagggcat cctgcactcg
961 ccggctagcc agtcccctga gcgcagccca ccgctcggcg gcgccgctgg ccacgtggcc
1021 tactccggcc agctgccgcc agtgcccggc ctggcctacg acgcgccctc gccgcctgct
1081 ttcgccaaat cacagcccaa tatgtacggc ctggccgcct acacggcgcc actcagcagc
1141 tgcctgccac aacagaagcg ctacgcagcg ccggagttcg agccccatcc catggcgagc
1201 aacggcggcg gcttcgccag cgccaacctg cagggcagcc cggtgtacgt gggcggcaac
1261 ttcgtcgagt ccatggcgcc cgcgtccggg cctgtcttca acctgggcca cctctcgcac
1321 ccgtcgtcgg ccagcgtgga ctacagttgc gccgcgcaga ttccaggcaa ccaccaccat
1381 ggaccttgcg accctcatcc cacctacaca gatctctcgg cccaccactc gtctcaggga
1441 cgactgccgg aggctcccaa actgacgcat ctgtagcggc cgccgccagc ccgaactcgc
1501 ggcaaaatta cctctcttgc tgtagtggtg gggtagaggg tggggcccgc ggggcagttc
1561 gggaaccccc ttccccgctc ttgccctgcc gccgcctccc gggtctcagg cctccagcgg
1621 cggaggcgca ggcgaccggg cctcccctcc atgggcgtcc tttgggtgac tcgccataaa
1681 tcagccgcaa ggatccttcc ctgtaaattt gacagtgcca catactgcgg accaagggac
1741 tccaatctgg taatggtgtc ccaaaggtaa gtctgagacc catcggcggc gcgccctgca
1801 gagggaccag agcttggaga gtcttgggcc tggcccgcgt ctagcttagt ttcagagacc
1861 ttaatttata ttctccttcc tgtgccgtaa ggattgcatc ggactaaact atctgtattt
1921 attatttgaa gcgagtcatt tcgttccctg attatttatc cttgtctgaa tgtatttatg
1981 tgtatatttg tagatttatc cagccgagct taggaattcg cttccaggcc gtgggggcca
2041 catttcacct ccttagtccc cctggtctga actagttgag agagtagttt tgaacagtcg
2101 taaccgtggc tggtgtttgt agttgacata aaggattaag accgcaaatt gtccttcatg
2161 ggtagagtca ggaagcccgg tggcgtggca caacacactt tggtcatttc tcaaaaacca
2221 cagtcctcac cacagtttat tgatttcaaa ttgtctggta ctattggaac aaatatttag
2281 aataaaaaaa tttcccagtc aaaaaaaaaa aaaaaaaaaa
//