LOCUS BC005113 2904 bp mRNA linear HUM 20-DEC-2004
DEFINITION Homo sapiens SIN3 homolog B, transcription regulator (yeast), mRNA
(cDNA clone IMAGE:4040380), partial cds.
ACCESSION BC005113
VERSION BC005113.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2904)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2904)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2904
/db_xref="H-InvDB:HIT000086465"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4040380"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2904
/gene="SIN3B"
/gene_synonym="KIAA0700"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
CDS <1..1265
/gene="SIN3B"
/gene_synonym="KIAA0700"
/codon_start=3
/product="SIN3B protein"
/protein_id="AAH05113.1"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
/translation="EEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLR
LHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVEL
EEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVS
DDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQR
KGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRN
LKKFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMY
RRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPC
KTLCETVHVHGLPVTRYRVQYSRRPASP"
BASE COUNT 566 a 908 c 869 g 561 t
ORIGIN
1 cagaggagaa gggggccttc ggggatgccc cggccactga gcagccaccc ctgccgcccc
61 cagccccgca caagcccctg gacgatgtct acagcctatt ttttgccaac aacaactggt
121 acttcttcct gcgcctgcac cagaccctgt gctccaggct gctgaagatc taccgccagg
181 cgcagaagca gcttctggag tatcggaccg agaaggagcg ggagaagctg ctgtgtgagg
241 gccgcaggga gaagggcagc gaccccgcca tggagctgcg gctgaagcag cccagtgaag
301 tggagctgga ggagtactac ccggccttcc tggacatggt gcggagcctg ctggagggca
361 gcatcgaccc cacgcagtac gaggacaccc tacgcgagat gttcaccatc catgcctacg
421 tgggcttcac catggacaag ctggtgcaga acattgcgcg gcagctgcac cacctcgtga
481 gcgatgacgt ctgcctgaag gtggtggagc tctacctgaa cgagaagaag cggggtgccg
541 ctggtgggaa cctgtcctcc cgctgcgtcc gcgctgctag ggagaccagc taccagtgga
601 aggctgagcg ctgcatggcc gacgagaact gcttcaaggt gatgttcctg cagcgcaaag
661 ggcaggtgat catgaccatc gagctcctgg acaccgagga ggcccagacg gaggaccctg
721 tggaggtcca gcacctggct cggtacgtgg agcagtatgt ggggaccgag ggcgcgtcca
781 gctcgcccac tgagggcttc ctcctgaaac ctgtgttcct gcagaggaac ctcaagaagt
841 tccgccgccg gtggcagagc gagcaggcgc gggccctgcg cggtgaggcc aggagctcct
901 ggaagcggct ggtgggcgtg gagagcgcct gcgacgtgga ctgccgcttc aagctcagca
961 ctcacaagat ggtgttcatc gtgaactccg aggactacat gtaccgtcgc gggaccctct
1021 gccgggccaa gcaggtgcag cccctggtcc tgctccgcca ccaccagcac tttgaggagt
1081 ggcacagccg ctggctggag gacaatgtga cggtggaggc ggctagcctg gtgcaggact
1141 ggctgatggg tgaggaggac gaggacatgg taccctgcaa gacgctgtgt gagacagtgc
1201 acgtgcacgg cctgcccgtg acccgctacc gcgtgcagta cagccgccgc ccggcctcgc
1261 cctgacccgc cctcatgggc accgggcagg cgcctcacag agcacagacg tgccctcggc
1321 cttggtcgtg tcggggccgt tttcttgaac gacgtgagag gcatctccca gcccctctgc
1381 tgccggacag cgcactccag ggcaggacgc cgcccccgtg gctcccggtc tcctgtgggc
1441 ctgctgtgtg ccaaacctga gctacctgca cccgagccct ggggctcagc cccaccacag
1501 gggcgggtgg acgtgctggc cgaggaacaa gcaatcatgt ttgcgtcccc gtccgtcaca
1561 tgtgccaaat ccctggcagg cagatggctc ctgccccata ttcttgccgt gtcttggaaa
1621 agtcacaggt gacagccctc ctgaggccca cactttggag ggggtccatg tccaagagac
1681 cctgacaagg aaggagttga gccctgggta ggcttgcttg aaaagtgagt ccttccagaa
1741 tattctcaga gctgccagaa acatcatctg agggtttggg catcagctct gcctggctgg
1801 tgttcaggcc ctcagtcact ttggaagtga gaagaaccct tcagccaaac ctttgggatc
1861 ccattttgaa gtccagagct ggagcaggcg ggcagtgccc tgggagaccc cgctctggat
1921 aagacaccca accccaactc cagcagctgg actctgggcc cacaagggga gggaccccag
1981 ccagtattcc ctcagagccg gcacgaccct gctgtggggc ggcgggccca gtcgtgttcc
2041 tgcagtgggc accctaggcg tatgtgtata cacgcacaga tatttattcc tttcgctttt
2101 agtggttgtt atttctgtag cagccaagtc ctgcggctcc ctggggctga gatctccctt
2161 tgtggaactc cgagagccgc cctgacagtc ccagccgcca cccaaggagc cccatccgcc
2221 cacccaccct gggacccacg cggccactcc agggatcatt gttgtccttt tgtgaggggc
2281 tgaggcgact gtcccatgga ggcatccaag gctttctgtg ccaagaatcc caagtgactg
2341 gggctgggga ccacttctcc aggcctctct ccccgaccat gagagcccct ggccctggcc
2401 cctgcacacc agtaggccca gaataaccgc cacccttgcc atcctgcaac agctggactc
2461 aagtttccag gaagtggaga tgtgtttcta gaagtttcct gtggaacctg gaggctcctg
2521 atgcctttga ctccaggctg ggcgattccg atgctgaccc gtcctcctgg gctccccacc
2581 cccgctcccc aagtgtcaca caggcacttt gtacacatcc tggttttcta agaagggaac
2641 ttgccatcaa gattcctgta ccaggcccac ggccgtctcg ggcagagcca cctgggcccc
2701 gggtgcagcc ggagaccccg ccgagcccct cctcccagta ttcccatccc cgcatgcttc
2761 tagggagcgc ctcttttccg ttcttgagga atttctgttc tggggcttgt ccttcctttg
2821 cagctgtttt gaatgtagtt ttccttttct atttatttgc acattaaagt taataattga
2881 atattgaaaa aaaaaaaaaa aaaa
//