LOCUS BC005081 1451 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens brevican, mRNA (cDNA clone IMAGE:3618761), with
apparent retained intron.
ACCESSION BC005081
VERSION BC005081.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1451)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1451)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: g Column: 21
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1451
/db_xref="H-InvDB:HIT000086449"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3618761"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 315 a 393 c 496 g 247 t
ORIGIN
1 ggtgcccctt ggacttgacg ccaatctctt ggtcctatta gaaccatgta ggcagagcta
61 ttccaatagg tgggggaata cctgacagga tatggaaata cctgggagag ggaattccca
121 ggcccctggc agtgctagga aggaatgcaa tagtggtaac cgaattccag ctaatagtta
181 ctgatgtcta cctgagccag ttctcctaaa tgcttcctgt ggataacctc aactgtgaga
241 aaaagattgt ttatgttttg ctcattacac cgatgaggaa cccgaggttc agagaagtca
301 actaactacc ccaaggtcac agagcaagga gccgagttgg gattccagcc gaaatgggca
361 ctccgaccac cccctagagc ggctctgatc ggctgtcctg ccggactaca gtaaggtgtc
421 cccagaaggg ttgctggccg ctgctcctgg agctgcctgt gcgtgggggc acggaggcaa
481 ggactgatcc ggaacgctac cgccctgcct gggacaaggt cggaaatctc ggcggccgcg
541 ctgggacagg agcgcgcagc agggaagatg cgaggacccg aggggttgct gatcagactg
601 cgagcagcag gggggctgcc actggcagag ctggaagcat gtagatcaga gatggcagca
661 gcagctgcag gcgctcgggg ctgtccagca gcctaccccg ctgcggtgtc aggagtcgac
721 gagttgggtg ccccagagcc tcgaggcaag ggctgacagg cggggggcgc agaccaggca
781 ggcactccct tctccctgtc cccgacccca cggcgggcgg cggggctgcg gaggcactca
841 cctacccagg gctggggttg ggtcgcggca ctgcgaagtt tgtcgcctcc tccgggggtc
901 tcctccgggt gcacggctca gtcctgcagc tgcagctgag actgcggcgg agactgcgcg
961 agcgtgagga gaggctgggg ccgcaggaca ttcggaagag ggcgccggcc ctcccggcgc
1021 agcacaaaac cccctttctt ccccccgccc ctgccccgcc ctccccgggg ccgcccccgc
1081 cccctggtcg ggagcgcggg gctctcggga cggtcacggg acccgctgcc ttctctgctt
1141 cggctccggc agcagcggcg agagcaagga cgagcgaagt aggacatcgt tcagcggatg
1201 agaagccgag ggcttggagt agggaggagg ggcaggaggg gcggggaggg agcgttcgcc
1261 cagcgttcgc tgagctaaag gatgacgatg ttgcagctgg aggggtggaa gttggacaac
1321 tggagagtct tctcgttgtt caaagaagaa ggaggaggga gtcaattaga ctgtaagaag
1381 tggatgaagg gagaatgggg gctttgctcc tgaaaagaga caccctttct aataaaaaaa
1441 aaaaaaaaaa a
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