LOCUS BC005080 1240 bp mRNA linear HUM 04-JAN-2007
DEFINITION Homo sapiens immediate early response 3, mRNA (cDNA clone MGC:13037
IMAGE:3617088), complete cds.
ACCESSION BC005080
VERSION BC005080.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1240)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1240)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: g Column: 17.
FEATURES Location/Qualifiers
source 1..1240
/db_xref="H-InvDB:HIT000032204_05"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13037 IMAGE:3617088"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1240
/gene="IER3"
/gene_synonym="DIF-2"
/gene_synonym="DIF2"
/gene_synonym="GLY96"
/gene_synonym="IEX-1"
/gene_synonym="IEX-1L"
/gene_synonym="IEX1"
/gene_synonym="PRG1"
/db_xref="GeneID:8870"
/db_xref="HGNC:HGNC:5392"
/db_xref="MIM:602996"
CDS 19..489
/gene="IER3"
/gene_synonym="DIF-2"
/gene_synonym="DIF2"
/gene_synonym="GLY96"
/gene_synonym="IEX-1"
/gene_synonym="IEX-1L"
/gene_synonym="IEX1"
/gene_synonym="PRG1"
/codon_start=1
/product="immediate early response 3"
/protein_id="AAH05080.1"
/db_xref="GeneID:8870"
/db_xref="HGNC:HGNC:5392"
/db_xref="MIM:602996"
/translation="MCHSRSCHPTMTILQAPTPAPSTIPGPRRGSGPEIFTFDPLPEP
AAAPAGRPSASRGHRKRSRRVLYPRVVRRQLPVEEPNPAKRLLFLLLTIVFCQILMAE
EGVPAPLPPEDAPNAASLAPTPVSPVLEPFNLTSEPSDYALDLSTFLQQHPAAF"
BASE COUNT 266 a 370 c 342 g 262 t
ORIGIN
1 cactccgctc ggctcaccat gtgtcactct cgcagctgcc acccgaccat gaccatcctg
61 caggccccga ccccggcccc ctccaccatc ccgggacccc ggcggggctc cggtcctgag
121 atcttcacct tcgaccctct cccggagccc gcagcggccc ctgccgggcg ccccagcgcc
181 tctcgcgggc accgaaagcg cagccgcagg gttctctacc ctcgagtggt ccggcgccag
241 ctgccagtcg aggaaccgaa cccagccaaa aggcttctct ttctgctgct caccatcgtc
301 ttctgccaga tcctgatggc tgaagagggt gtgccggcgc ccctgcctcc agaggacgcc
361 cctaacgccg catccctggc gcccacccct gtgtcccccg tcctcgagcc ctttaatctg
421 acttcggagc cctcggacta cgctctggac ctcagcactt tcctccagca acacccggcc
481 gccttctaac tgtgactccc cgcactcccc aaaaagaatc cgaaaaacca caaagaaaca
541 ccaggcgtac ctggtgcgcg agagcgtatc cccaactggg acttccgagg caacttgaac
601 tcagaacact acagcggaga cgccacccgg tgcttgaggc gggaccgagg cgcacagaga
661 ccgaggcgca tagagaccga ggcacagccc agctggggct aggcccggtg ggaaggagag
721 cgtcgttaat ttatttctta ttgctcctaa ttaatattta tatgtattta tgtacgtcct
781 cctaggtgat ggagatgtgt acgtaatatt tattttaact tatgcaaggg tgtgagatgt
841 tccccctgct gtaaatgcag gtctcttggt atttattgag ctttgtggga ctggtggaag
901 caggacacct ggaactgcgg caaagtagga gaagaaatgg ggaggactcg ggtgggggag
961 gacgtcccgg ctgggatgaa gtctggtggt gggtcgtaag tttaggaggt gactgcatcc
1021 tccagcatct caactccgtc tgtctactgt gtgagacttc ggcggaccat taggaatgag
1081 atccgtgaga tccttccatc ttcttgaagt cgcctttagg gtggctgcga ggtagagggt
1141 tgggggttgg tgggctgtca cggagcgact gtcgagatcg cctagtatgt tctgtgaaca
1201 caaataaaat tgatttactg tcaaaaaaaa aaaaaaaaaa
//