LOCUS BC005079 2533 bp mRNA linear HUM 01-SEP-2006 DEFINITION Homo sapiens chromosome 2 open reading frame 42, mRNA (cDNA clone MGC:13036 IMAGE:3615724), complete cds. ACCESSION BC005079 VERSION BC005079.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2533) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2533) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 18 Row: g Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8923527. FEATURES Location/Qualifiers source 1..2533 /db_xref="H-InvDB:HIT000032203" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:13036 IMAGE:3615724" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2533 /gene="C2orf42" /gene_synonym="FLJ20558" /db_xref="GeneID:54980" /db_xref="HGNC:HGNC:26056" CDS 318..2042 /gene="C2orf42" /gene_synonym="FLJ20558" /codon_start=1 /product="chromosome 2 open reading frame 42" /protein_id="AAH05079.1" /db_xref="GeneID:54980" /db_xref="HGNC:HGNC:26056" /translation="MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKN KTCGTIFRYGARKQPSVEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTV DGTIITQLSSGRCYVPSCLKAATQGVVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQ ASPETKQTIWQLATEPTGPLVQRITKNILVVKCKASQKHSLGYLHTSFVQKVSGKSLP ERRFFCSCQTLKSHKSNASKDETAQRCIHFFACICAFASDETLAQEFSDFLNFDSSGL KEIIVPQLGCHSESTVSACESTASKSKKRRKDEVSGAQMNSSLLPQDAVSSNLRKSGL KKPVVASSLKRQACGQLLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIP QSFFDALQQRISIGSAKKRLPNSTTAFVRKDALPLGTFSKYTWHITNILQVKQILDTP EMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEKQPVLRPLELKTFLKVGNT SPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVAEYQDQRPPLDQPLELA PLTTITFP" BASE COUNT 728 a 590 c 569 g 646 t ORIGIN 1 gtttgtaaaa ggccgcggca ggcgaagaga gaagagacta tcaagatctc cacttaggga 61 agtgggaatc ttatttgcgg aacattgggc agaagctttg ccattggctg gtggagaagg 121 aggaggcaga atgtctgcat tgttacacca tacagctcaa acttcagaag attttgggtt 181 aagcagttat cattagtctg caaatgatcg tgttttcacc tgatcattag aaactaatga 241 aacacctttt aagtcttatg aattcaggtt acactgtttt ccagatgcct tggcagctgg 301 tacagggcct ctgaaaaatg gaaccaaatt ctctgaggac taaagtccca gctttcttat 361 ctgatttggg gaaggccaca ttgaggggaa tcagaaagtg tccccgatgt ggcacataca 421 atggaacccg gggactgagc tgtaagaaca agacatgtgg aaccatattc cgctacggtg 481 cacgcaagca gcctagtgtt gaagctgtca aaatcattac aggctctgat cttcaggtct 541 actcagtgcg gcaaagagac cggggccctg attaccgatg ctttgtggag ctcggggttt 601 cagagacaac aatccagaca gtggatggga cgatcatcac tcagctgagc tctggacggt 661 gttatgtccc ctcatgcctg aaagctgcca ctcaaggcgt tgtggaaaac cagtgccagc 721 acatcaagct ggcggtgaac tgccaggcag aggccacccc tctgaccctg aagagctcgg 781 tcctgaatgc aatgcaggcc tccccggaaa ccaaacagac catctggcag ttggccacgg 841 aacccacagg tcctctggtg cagagaatta ctaaaaacat cttggtggtg aaatgcaagg 901 caagccagaa gcacagtttg gggtatttgc atacatcttt tgtgcagaaa gtcagtggca 961 aaagcttgcc tgagcgccgc ttcttctgct cctgtcagac tctgaaatcg cacaagtcaa 1021 atgcctccaa ggatgagaca gcccagagat gcattcattt ctttgcttgc atctgtgcct 1081 ttgccagtga tgagacactg gctcaggaat tctcagactt cctaaatttt gattccagcg 1141 gtcttaaaga gattattgta ccccagttag gttgccattc agaatcaaca gtatctgctt 1201 gtgagtctac tgcctctaag tcaaagaaga ggagaaagga tgaagtatct ggtgcacaga 1261 tgaacagttc actactgcct caagatgcag tgagcagtaa tctaaggaaa agtggcctga 1321 aaaagcctgt ggttgcttcc tcgttaaaaa ggcaggcctg tggtcagctg ttagatgagg 1381 cacaagtgac tttatccttc caagactggc tggccagtgt cacagaacgc atccatcaaa 1441 ccatgcacta tcagtttgat ggcaaaccag aaccattggt gttccacatt cctcagtcat 1501 tttttgatgc cctgcaacaa agaatatcta taggaagtgc aaaaaaacgg ctccccaact 1561 ccaccacagc ttttgttcgg aaagatgcct tgccactggg aaccttttcc aagtatactt 1621 ggcatatcac taatatcctg caagttaaac aaatcttaga taccccagag atgcccttgg 1681 aaatcacccg tagctttatc cagaaccgag atgggactta tgagctattt aaatgcccta 1741 aagtggaagt agaaagcata gcagaaacct acggtcgtat agaaaaacaa ccagtgctgc 1801 gacccttgga actaaaaact tttctcaaag ttggcaacac ttccccagat caaaaggagc 1861 caacaccttt catcattgag tggatcccag atatccttcc ccaatctaag attggcgagc 1921 tgcggatcaa gtttgagtat ggccaccacc ggaatgggca tgtggcggag taccaagacc 1981 agcggccccc cttggaccag cccttggaac tggcccctct gaccactatt actttccctt 2041 aaagcaaaac aagataataa tcttttgctg cttaatttgc acatccccac cccttgacaa 2101 ctttaaatgc tagttaggca cttagatggc cctgttcctt ggtaaactgc tcttagctaa 2161 gatgcaaatt ctcagtgctt tcaagtggat tctgttgaag aaaatctctt gtaaatagcc 2221 tttttgatgc tgctgtgtac agtcttcatt atgcattggg cagtatttct ggctagagtt 2281 ttaaaaggaa cagaaagaaa accagcttat tttccttctt acggactcat ctttagcgtt 2341 tatttcaacc ttttgctaat tctctgagaa atctgcagca ctcagccata caccaacagt 2401 gttggaaagt taacaccctg gttagggcag aatgttaaag accatcttgg cagagttcca 2461 gccacgctct ttattctgtt ctcaaataaa gcagtgtcac tagtttttcc taaaaaaaaa 2521 aaaaaaaaaa aaa //